Factsheet for GSMUA_Achr8P07870_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76920.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT1G76920.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT1G76920.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT1G76920.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT1G76920.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT1G76920.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G083600.1	Barley	extracellular	10.92	71.43
HORVU7Hr1G083560.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.89	67.12
Zm00001d035880_P001	Maize	plastid	28.4	60.94
Zm00001d026678_P001	Maize	plastid	56.8	57.21
TraesCS2B01G610300.1	Wheat	cytosol, peroxisome, plastid	57.04	57.18
EES13145	Sorghum	cytosol, nucleus, plastid	56.31	56.17
Zm00001d002882_P001	Maize	cytosol, nucleus, plastid	54.61	55.01
HORVU2Hr1G124540.2	Barley	cytosol	46.84	54.06
TraesCS4A01G184400.1	Wheat	mitochondrion, plastid	25.97	53.77
TraesCS2D01G588100.1	Wheat	plastid	56.55	52.36
TraesCS2A01G577100.1	Wheat	cytosol, plasma membrane, plastid	56.55	51.66
CDY48548	Canola	cytosol, nucleus, peroxisome, plastid	42.23	47.28
Bra003700.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	42.23	47.28
CDX68078	Canola	cytosol, nucleus, peroxisome, plastid	41.99	47.01
VIT_18s0076g00350.t01	Wine grape	cytosol	42.48	46.79
Os04t0686700-01	Rice	plastid	47.57	46.12
AT1G76920.1	Thale cress	cytosol	41.75	45.99
PGSC0003DMT400002094	Potato	cytosol	41.5	45.36
Solyc04g071130.1.1	Tomato	extracellular	41.5	45.36
HORVU7Hr1G066100.1	Barley	cytosol, mitochondrion, plastid	19.17	44.89
KRH70323	Soybean	cytosol	39.56	44.41
Zm00001d009851_P001	Maize	nucleus, peroxisome, plasma membrane	40.05	32.42
HORVU5Hr1G045010.1	Barley	extracellular, plastid, vacuole	25.24	30.95
HORVU7Hr1G083580.2	Barley	cytosol	6.55	29.35
HORVU2Hr1G124610.1	Barley	cytosol	10.44	20.87
Zm00001d024013_P001	Maize	cytosol	11.16	17.62
Zm00001d003753_P001	Maize	cytosol	1.46	6.74
Zm00001d047158_P001	Maize	cytosol	1.46	6.74

Protein Annotations

EnsemblPlants:GSMUA_Achr8P07870_001	EnsemblPlants:GSMUA_Achr8T07870_001	EnsemblPlantsGene:GSMUA_Achr8G07870_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR44829	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI00029528AF	UniProt:M0TNJ0	MapMan:35.1	:	:

Description

Putative SKP1-interacting partner 15 [Source:GMGC_GENE;Acc:GSMUA_Achr8G07870_001]

Coordinates

chr8:-:5264962..5266368

Molecular Weight (calculated)

44577.1 Da

IEP (calculated)

9.115

GRAVY (calculated)

0.129

Length

412 amino acids

Sequence
(BLAST)

001: MRETHAAADS EASVEVAGLC ALPPASPIQL LPQDVLHNVL GRLSLCEVLA CRPVCRTFRD ALSSTPFLAS LPPLRLLALR HPRAAASPHP SLHALDPSFH
101: RWIRLPLSFL PFPSFSPVTA SPSLLYLWVD AAPSSASAVA TFARNHTKSL AVCNPLTGFH RLLPPLGSAW SRHGTVLAGP DGAVLVVTEL AALSYAPSPD
201: RWLKFPLSLP SKPRSPILMA DSVFALCDVG TPWRSQWKLF SCRLGDLGGV RGWAPLEQQE WGNVFDIFKR PRLLAGAGGC RLLLIGGLRS SFAVDAPCST
301: VLILRLDLAT MEWDDAGKMP PEMYRCFGGG ASGPSVAAAG GNNKVKVFVG VVYGVGWRVF QGTLKPCTEV SSSMPGSPQH LEQVKELLTK AYTDLYSRPL
401: SARWRFCWRP CN

Best Arabidopsis Sequence Match ( AT1G76920.1 )
(BLAST)

001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP

Arabidopsis Description

SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.