CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76920.1	KRH22291	AT2G42580.1	19000166
AT1G76920.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0076g00350.t01	Wine grape	cytosol	62.67	61.5
Bra003700.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	58.86	58.7
CDY48548	Canola	cytosol, nucleus, peroxisome, plastid	58.86	58.7
CDX68078	Canola	cytosol, nucleus, peroxisome, plastid	58.58	58.42
AT1G76920.1	Thale cress	cytosol	58.31	57.22
HORVU7Hr1G083600.1	Barley	extracellular	9.54	55.56
Solyc04g071130.1.1	Tomato	extracellular	56.68	55.17
PGSC0003DMT400002094	Potato	cytosol	56.4	54.91
Zm00001d035880_P001	Maize	plastid	25.34	48.44
HORVU7Hr1G083560.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	9.26	46.58
TraesCS4A01G184400.1	Wheat	mitochondrion, plastid	24.8	45.73
TraesCS2B01G610300.1	Wheat	cytosol, peroxisome, plastid	49.32	44.04
Zm00001d026678_P001	Maize	plastid	48.5	43.52
Zm00001d002882_P001	Maize	cytosol, nucleus, plastid	47.68	42.79
EES13145	Sorghum	cytosol, nucleus, plastid	47.96	42.62
TraesCS2D01G588100.1	Wheat	plastid	49.59	40.9
TraesCS2A01G577100.1	Wheat	cytosol, plasma membrane, plastid	49.59	40.35
GSMUA_Achr8P07870_001	Banana	cytosol, peroxisome, plastid	44.41	39.56
HORVU2Hr1G124540.2	Barley	cytosol	38.42	39.5
HORVU7Hr1G066100.1	Barley	cytosol, mitochondrion, plastid	17.44	36.36
Os04t0686700-01	Rice	plastid	41.96	36.24
HORVU7Hr1G083580.2	Barley	cytosol	8.72	34.78
HORVU5Hr1G045010.1	Barley	extracellular, plastid, vacuole	23.98	26.19
Zm00001d009851_P001	Maize	nucleus, peroxisome, plasma membrane	33.52	24.16
HORVU2Hr1G124610.1	Barley	cytosol	11.72	20.87
Zm00001d024013_P001	Maize	cytosol	10.35	14.56
Zm00001d003753_P001	Maize	cytosol	1.91	7.87
Zm00001d047158_P001	Maize	cytosol	1.91	7.87

Protein Annotations

EntrezGene:100804297	MapMan:35.1	EMBL:ACUP02000762	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_02G083400	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	UniProt:I1JDF9	InterPro:IPR001810	InterPro:IPR015915	EnsemblPlants:KRH70323	ProteinID:KRH70323
ProteinID:KRH70323.1	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PANTHER:PTHR45291	SUPFAM:SSF117281	UniParc:UPI0001CAA0B2

Description

hypothetical protein

Coordinates

chr2:+:7247146..7248669

Molecular Weight (calculated)

41659.4 Da

IEP (calculated)

9.786

GRAVY (calculated)

-0.108

Length

367 amino acids

Sequence
(BLAST)

001: MEEEAGIYRL AEDSLRQIFC RLPLREIMIC RSVSKFFLQL LSTPSFLQVL SSSHPPLQLL ALRNRHHTPS HTSLPLFDPA TKSWLHFPLD FLPFHSPLPV
101: ASSLGLLYLW AHNNSNSNSK SLICCNPLTR TFRVLPHLGS AWSRHGSVLV DSEDRVMVLT ELAALYCHRN TTTWLKFSSN LPSKPRSSLL INDSAFALCD
201: VGSPWRNRWK LFSCTIKSTT TSVVPVWSPL DRHEWGDVFD VLNRPRLVRG GHGNFILMVG GLKSSFALNA PCSTILVLRL DLDNLRWDEA ARMPPEMFRA
301: FRESTKFKVF GGAGDMVCFS AKRIGKLALW DRRASEGHEW RWIDNLPENG KGLYRGFVFE GRLNAVP

Best Arabidopsis Sequence Match ( AT1G76920.1 )
(BLAST)

001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP

Arabidopsis Description

SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.