Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13145 | Sorghum | cytosol, nucleus, plastid | 92.67 | 91.77 |
| Zm00001d026678_P001 | Maize | plastid | 91.69 | 91.69 |
| HORVU7Hr1G083600.1 | Barley | extracellular | 13.94 | 90.48 |
| HORVU7Hr1G083560.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.16 | 84.93 |
| Zm00001d035880_P001 | Maize | plastid | 39.61 | 84.38 |
| TraesCS4A01G184400.1 | Wheat | mitochondrion, plastid | 40.83 | 83.92 |
| TraesCS2B01G610300.1 | Wheat | cytosol, peroxisome, plastid | 81.17 | 80.78 |
| HORVU7Hr1G083580.2 | Barley | cytosol | 17.36 | 77.17 |
| TraesCS2D01G588100.1 | Wheat | plastid | 80.68 | 74.16 |
| TraesCS2A01G577100.1 | Wheat | cytosol, plasma membrane, plastid | 81.42 | 73.84 |
| Os04t0686700-01 | Rice | plastid | 70.66 | 68.0 |
| HORVU2Hr1G124540.2 | Barley | cytosol | 58.44 | 66.95 |
| HORVU7Hr1G066100.1 | Barley | cytosol, mitochondrion, plastid | 28.61 | 66.48 |
| GSMUA_Achr8P07870_001 | Banana | cytosol, peroxisome, plastid | 55.01 | 54.61 |
| VIT_18s0076g00350.t01 | Wine grape | cytosol | 45.48 | 49.73 |
| Bra003700.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 43.77 | 48.64 |
| CDY48548 | Canola | cytosol, nucleus, peroxisome, plastid | 43.52 | 48.37 |
| CDX68078 | Canola | cytosol, nucleus, peroxisome, plastid | 43.52 | 48.37 |
| AT1G76920.1 | Thale cress | cytosol | 44.01 | 48.13 |
| KRH70323 | Soybean | cytosol | 42.79 | 47.68 |
| Zm00001d009851_P001 | Maize | nucleus, peroxisome, plasma membrane | 59.17 | 47.54 |
| Solyc04g071130.1.1 | Tomato | extracellular | 43.77 | 47.48 |
| PGSC0003DMT400002094 | Potato | cytosol | 43.52 | 47.21 |
| HORVU5Hr1G045010.1 | Barley | extracellular, plastid, vacuole | 37.9 | 46.13 |
| HORVU2Hr1G124610.1 | Barley | cytosol | 22.49 | 44.66 |
| Zm00001d024013_P001 | Maize | cytosol | 16.63 | 26.05 |
| Zm00001d003753_P001 | Maize | cytosol | 2.93 | 13.48 |
| Zm00001d047158_P001 | Maize | cytosol | 2.93 | 13.48 |
Protein Annotations
| EnsemblPlants:Zm00001d002882_P001 | EnsemblPlants:Zm00001d002882_T001 | EnsemblPlantsGene:Zm00001d002882 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | PANTHER:PTHR31264 | PFAM:PF00646 |
| ProteinID:ONM15576.1 | SEG:seg | SUPFAM:SSF50965 | SUPFAM:SSF81383 | UniParc:UPI000842FE97 | UniProt:A0A1D6E503 |
| MapMan:35.1 | : | : | : | : | : |
Description
SKP1-interacting partner 15
Coordinates
chr2:-:25583792..25585021
Molecular Weight (calculated)
44106.4 Da
IEP (calculated)
8.961
GRAVY (calculated)
0.014
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGGSCPDPA AEAQLPPPIH HLPPDALHNV LLRLQLRDAV VCRLVSRLFH ETLSPQLLAL LPTLRLLLLR HPRPDGGGCL HAFDPARRTW LRLPFAHFLP
101: YQSFSPVASS TSLLYLWVET SSSTSPLALQ STTTSSSAAS PAHPLKSLAV CNPFAGTYRL LPQLGSAWAR HGTVLAGPGG MVLVLTELAA LSYTPSESGK
201: WMKHPLSLPS KPRSPILASA AVFALCDVGT PWRSQWKLFS CPLDRLTGGW APVERAAWGD VFEVLKRPRL LAGAGGRRVL MVGGLRSSFA MDAPCSTVLI
301: LRLDLATMEW DEAGRMPPNM YRCFTGLCEA ASQGNAMPAT AGGGNNKVKV FGGDGKVWFA GKRVRGKLAM WEEDETGSSG KWDWVDGVPG YDDGVYRGFV
401: FDSGFTAIP
101: YQSFSPVASS TSLLYLWVET SSSTSPLALQ STTTSSSAAS PAHPLKSLAV CNPFAGTYRL LPQLGSAWAR HGTVLAGPGG MVLVLTELAA LSYTPSESGK
201: WMKHPLSLPS KPRSPILASA AVFALCDVGT PWRSQWKLFS CPLDRLTGGW APVERAAWGD VFEVLKRPRL LAGAGGRRVL MVGGLRSSFA MDAPCSTVLI
301: LRLDLATMEW DEAGRMPPNM YRCFTGLCEA ASQGNAMPAT AGGGNNKVKV FGGDGKVWFA GKRVRGKLAM WEEDETGSSG KWDWVDGVPG YDDGVYRGFV
401: FDSGFTAIP
001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
Arabidopsis Description
SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.