Factsheet for TraesCS2B01G610300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76920.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G184400.1	Wheat	mitochondrion, plastid	44.04	90.95
TraesCS2D01G588100.1	Wheat	plastid	95.13	87.87
TraesCS2A01G577100.1	Wheat	cytosol, plasma membrane, plastid	94.4	86.03
Zm00001d035880_P001	Maize	plastid	38.69	82.81
EES13145	Sorghum	cytosol, nucleus, plastid	82.24	81.84
Zm00001d026678_P001	Maize	plastid	80.78	81.17
Zm00001d002882_P001	Maize	cytosol, nucleus, plastid	80.78	81.17
HORVU2Hr1G124540.2	Barley	cytosol	67.64	77.87
Os04t0686700-01	Rice	plastid	70.32	68.0
GSMUA_Achr8P07870_001	Banana	cytosol, peroxisome, plastid	57.18	57.04
Bra003700.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	45.74	51.09
CDY48548	Canola	cytosol, nucleus, peroxisome, plastid	45.5	50.82
CDX68078	Canola	cytosol, nucleus, peroxisome, plastid	45.5	50.82
VIT_18s0076g00350.t01	Wine grape	cytosol	45.74	50.27
AT1G76920.1	Thale cress	cytosol	45.01	49.47
KRH70323	Soybean	cytosol	44.04	49.32
Solyc04g071130.1.1	Tomato	extracellular	44.53	48.54
PGSC0003DMT400002094	Potato	cytosol	44.28	48.28
Zm00001d009851_P001	Maize	nucleus, peroxisome, plasma membrane	54.5	44.01
Zm00001d024013_P001	Maize	cytosol	15.33	24.14
Zm00001d003753_P001	Maize	cytosol	3.41	15.73
Zm00001d047158_P001	Maize	cytosol	3.41	15.73

Protein Annotations

EnsemblPlants:TraesCS2B01G610300.1	EnsemblPlantsGene:TraesCS2B01G610300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	PFAM:PF00646	SEG:seg	SUPFAM:SSF81383	MapMan:35.1

Description

No Description!

Coordinates

chr2B:-:789949968..789951203

Molecular Weight (calculated)

43629.9 Da

IEP (calculated)

9.523

GRAVY (calculated)

0.090

Length

411 amino acids

Sequence
(BLAST)

001: MAGSDDDEAA AAAALAPIHC LPPDALRNVL LRLTLRDAVA CRPVSRLFRE TLTGPFLALL PALRLLLLRH PRPDGGGCLH AFDPDRRRWL RLPFTAFLPH
101: QAFSPVASSA SLLYLWIETA PAPLTSSSSS SSSSSPAAAH PPKALAVCNP LAGTYRLLPP LGSAWARHGT VLAGPGGVVL VLTELAALSY SPSEGSGKWM
201: KHPLSLPSKP RSPILAAGAR AVFALCDVGT PWRSQWKLFS CPLARLTGGW APVERASWGD VFEILKRPRL LAGAGGRRVL MIGGLRSSFA LDAPCSTVLI
301: LRLDLATMEW DEAGRMPPNM YRCFTGLCEA AAQGSAMPAA PVAGGNNKVK VFGGDGKVWF GGKRVRGKLA MWEEDDVGSS GGKWDWVDGV PGYGDGVYRG
401: FVFDGGFTAM P

Best Arabidopsis Sequence Match ( AT1G76920.1 )
(BLAST)

001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP

Arabidopsis Description

SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.