Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G427400.1 | Wheat | cytosol | 98.42 | 98.57 |
| TraesCS1B01G462300.1 | Wheat | cytosol | 97.71 | 98.27 |
| HORVU1Hr1G093390.2 | Barley | cytosol | 93.41 | 96.88 |
| OQU78515 | Sorghum | cytosol | 79.94 | 79.71 |
| Os05t0587300-01 | Rice | cytosol | 62.18 | 78.2 |
| TraesCS3D01G231300.1 | Wheat | cytosol, mitochondrion | 74.79 | 75.87 |
| GSMUA_Achr4P08560_001 | Banana | cytosol | 59.89 | 61.02 |
| GSMUA_Achr7P24480_001 | Banana | cytosol | 56.16 | 60.4 |
| TraesCS3D01G144600.1 | Wheat | cytosol | 55.73 | 57.63 |
| VIT_18s0001g09830.t01 | Wine grape | cytosol | 21.35 | 56.44 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 40.4 | 56.06 |
| VIT_19s0014g01470.t01 | Wine grape | cytosol | 54.58 | 54.98 |
| GSMUA_Achr3P25160_001 | Banana | cytosol | 55.87 | 54.78 |
| KRH22291 | Soybean | plastid | 44.56 | 53.25 |
| VIT_12s0028g02240.t01 | Wine grape | cytosol | 53.87 | 52.96 |
| KRH55099 | Soybean | nucleus | 51.43 | 52.95 |
| Bra038116.1-P | Field mustard | cytosol | 49.71 | 52.74 |
| CDY25865 | Canola | cytosol | 49.71 | 52.74 |
| KRH26223 | Soybean | nucleus | 50.86 | 52.51 |
| KRH21985 | Soybean | cytosol | 51.86 | 52.31 |
| CDY45930 | Canola | cytosol | 49.28 | 52.2 |
| CDY25722 | Canola | cytosol, plastid | 49.86 | 52.17 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.91 | 51.87 |
| KRH27330 | Soybean | cytosol | 51.86 | 51.86 |
| Bra030946.1-P | Field mustard | cytosol, plastid | 49.71 | 51.79 |
| CDY02514 | Canola | cytosol, plastid | 49.71 | 51.79 |
| Solyc07g062580.2.1 | Tomato | cytosol | 52.01 | 51.78 |
| PGSC0003DMT400032362 | Potato | cytosol | 51.86 | 51.71 |
| PGSC0003DMT400054803 | Potato | cytosol | 21.35 | 50.68 |
| AT1G53300.1 | Thale cress | cytosol | 49.71 | 49.64 |
| Zm00001d009724_P009 | Maize | cytosol | 74.64 | 48.74 |
| CDY34224 | Canola | cytosol | 4.73 | 47.83 |
| AT3G58620.1 | Thale cress | cytosol | 46.7 | 47.8 |
| Bra000267.1-P | Field mustard | cytosol | 45.99 | 47.77 |
| CDY61202 | Canola | cytosol | 45.85 | 47.69 |
| CDY42827 | Canola | cytosol | 45.42 | 47.24 |
| AT2G42580.1 | Thale cress | cytosol | 46.42 | 46.89 |
| Bra007405.1-P | Field mustard | cytosol | 45.13 | 46.81 |
| CDY51514 | Canola | cytosol | 44.7 | 46.64 |
| CDY55390 | Canola | cytosol | 44.56 | 46.49 |
| CDY49237 | Canola | cytosol | 44.27 | 46.33 |
| CDX71941 | Canola | cytosol | 44.7 | 46.29 |
| Bra004709.1-P | Field mustard | cytosol | 42.98 | 45.66 |
| KRH27037 | Soybean | nucleus | 44.13 | 45.63 |
| PGSC0003DMT400054902 | Potato | cytosol | 19.2 | 44.82 |
| Bra023795.1-P | Field mustard | cytosol | 5.44 | 43.18 |
| Solyc10g007240.1.1 | Tomato | cytosol | 36.39 | 42.76 |
| PGSC0003DMT400054904 | Potato | cytosol | 36.96 | 42.72 |
| PGSC0003DMT400054911 | Potato | cytosol | 31.23 | 41.84 |
| Solyc10g007230.1.1 | Tomato | cytosol | 35.67 | 41.78 |
| PGSC0003DMT400054796 | Potato | cytosol, plastid | 36.68 | 41.63 |
| Solyc10g007220.1.1 | Tomato | cytosol | 29.94 | 41.39 |
| AT3G14950.1 | Thale cress | cytosol | 43.12 | 41.23 |
| Solyc10g007420.2.1 | Tomato | cytosol | 24.21 | 39.76 |
| PGSC0003DMT400054909 | Potato | cytosol | 23.07 | 39.08 |
| Bra027292.1-P | Field mustard | cytosol | 40.97 | 38.96 |
| CDX98517 | Canola | cytosol | 40.4 | 38.95 |
| CDX97619 | Canola | cytosol | 40.4 | 38.9 |
| Solyc10g007250.1.1 | Tomato | cytosol | 15.33 | 38.35 |
| CDY32327 | Canola | cytosol | 39.83 | 38.13 |
| CDY20095 | Canola | nucleus | 39.68 | 38.05 |
| Bra021583.1-P | Field mustard | nucleus | 40.26 | 37.17 |
| CDY34222 | Canola | cytosol | 16.19 | 36.69 |
| PGSC0003DMT400091014 | Potato | nucleus | 31.66 | 36.41 |
| CDY40820 | Canola | mitochondrion | 14.61 | 36.3 |
| Solyc10g007430.1.1 | Tomato | cytosol, plastid | 19.34 | 35.71 |
| CDY34223 | Canola | cytosol | 16.05 | 34.36 |
| Bra023793.1-P | Field mustard | cytosol | 20.2 | 34.22 |
| Bra023794.1-P | Field mustard | cytosol, nucleus, plastid | 15.62 | 33.44 |
| TraesCS5D01G341400.1 | Wheat | cytosol | 8.45 | 25.76 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:11.3.2.5 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR013766 | InterPro:IPR019734 | PFAM:PF00085 | PFAM:PF00515 | PFAM:PF13414 | PFAM:PF14559 |
| PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF395 | SMART:SM00028 | SUPFAM:SSF48452 |
| SUPFAM:SSF52833 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_domain | EnsemblPlantsGene:TraesCS1D01G437100 | EnsemblPlants:TraesCS1D01G437100.1 | TIGR:cd02947 | SEG:seg | : |
Description
No Description!
Coordinates
chr1D:-:484416115..484419613
Molecular Weight (calculated)
73257.8 Da
IEP (calculated)
9.247
GRAVY (calculated)
-0.282
Length
698 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSEADRVR RLTLEAGGGV DRDKPDSKRD VFADLGSPVS PLRLRATPSS SSSSAGSAKS PALCNAAAAG GRGGGARSVS GRGSHSGELA AESGSGSASS
101: NPPRPPGHRR SGSGPLIFSG GSGSSGGGGG GGGGGSTASS PLTNALPTGN ICSSGRVAPA PAAPRPRARP DVLGSGTGHY GHGSIMRGGM APARSGGIDA
201: APLAGRSSRA PASFPAPPDS LQEVTRAGNE LYKQGRYGEA LRHYDRALAL CPDSAACRGN RAAALTGLGR LAEALRDCEE AVRLDPASGR AHGRLAALCL
301: RFGMVEKARR QLTLAGNTNQ SDPAEWQKLH EVESHLGKCM DARRVGDWKS ALREADAAIA NGADSSQLLL AMRSEALLRL NKLEEADSTI TSLLKLDSAS
401: LSSMSTKLSG MVADSYVHVV QAQVNMAFGR FDAAIAVAEK ARAIDPANAE VGLILNNMRL VARARAQGND LFKAGKFAEA SIAYGEGLKH ESSNPVLYCN
501: RAACWSKLGR WAKAVEDCNE ALRIQPSYTK ALLRRAASYA KLERWADCVR DYEVLRKELP GDTEVAESLF HAQVALKTTR GEEVSNMKFG GEVEIVTSIE
601: QVRAAIHSPG VTVLYFMATM NQQCAQITPS VDALCSECPS VNFLKVNVDE SPMIAKAENV RVVPAFKIYK DGARVKEMIC PSLHVLRYSV RHYAVSHS
101: NPPRPPGHRR SGSGPLIFSG GSGSSGGGGG GGGGGSTASS PLTNALPTGN ICSSGRVAPA PAAPRPRARP DVLGSGTGHY GHGSIMRGGM APARSGGIDA
201: APLAGRSSRA PASFPAPPDS LQEVTRAGNE LYKQGRYGEA LRHYDRALAL CPDSAACRGN RAAALTGLGR LAEALRDCEE AVRLDPASGR AHGRLAALCL
301: RFGMVEKARR QLTLAGNTNQ SDPAEWQKLH EVESHLGKCM DARRVGDWKS ALREADAAIA NGADSSQLLL AMRSEALLRL NKLEEADSTI TSLLKLDSAS
401: LSSMSTKLSG MVADSYVHVV QAQVNMAFGR FDAAIAVAEK ARAIDPANAE VGLILNNMRL VARARAQGND LFKAGKFAEA SIAYGEGLKH ESSNPVLYCN
501: RAACWSKLGR WAKAVEDCNE ALRIQPSYTK ALLRRAASYA KLERWADCVR DYEVLRKELP GDTEVAESLF HAQVALKTTR GEEVSNMKFG GEVEIVTSIE
601: QVRAAIHSPG VTVLYFMATM NQQCAQITPS VDALCSECPS VNFLKVNVDE SPMIAKAENV RVVPAFKIYK DGARVKEMIC PSLHVLRYSV RHYAVSHS
001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
Arabidopsis Description
TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.