Factsheet for TraesCS3B01G128000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G110700.1	Wheat	plastid	98.48	90.65
TraesCS3A01G108900.1	Wheat	golgi	99.32	90.59
Os01t0188400-01	Rice	plastid	91.03	84.19
TraesCS1B01G141700.1	Wheat	cytosol	80.88	83.86
VIT_04s0008g00180.t01	Wine grape	cytosol	80.2	81.03
Zm00001d037961_P004	Maize	plastid	87.82	80.59
Zm00001d037962_P003	Maize	plastid	87.48	80.28
KXG21798	Sorghum	plastid	87.65	79.45
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	77.5	77.5
HORVU3Hr1G019790.9	Barley	plastid	95.26	77.23
CDX91199	Canola	cytosol	76.14	76.53
CDY61446	Canola	cytosol	75.97	76.36
Bra023336.1-P	Field mustard	cytosol	75.97	76.36
CDX88203	Canola	cytosol	75.47	75.85
Bra009866.1-P	Field mustard	cytosol	75.47	75.85
Bra006107.1-P	Field mustard	cytosol	75.3	75.68
CDX80544	Canola	cytosol	75.3	75.68
Zm00001d000316_P001	Maize	plastid	76.99	75.46
AT5G11670.1	Thale cress	cytosol	74.96	75.34
CDX78432	Canola	cytosol	74.96	75.34
CDX70409	Canola	cytosol	74.96	75.34
AT5G25880.1	Thale cress	cytosol	74.45	74.83
KRH52781	Soybean	mitochondrion	78.17	74.64
KRH62099	Soybean	mitochondrion	78.17	74.28
EES00150	Sorghum	plastid	79.86	74.21
TraesCS3B01G309300.1	Wheat	mitochondrion	75.13	71.5
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	52.12	71.3
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	75.47	69.91
CDY02046	Canola	mitochondrion	59.22	62.61
OQU86165	Sorghum	mitochondrion	73.77	61.67
PGSC0003DMT400008389	Potato	mitochondrion	23.52	52.45
TraesCS2B01G256800.1	Wheat	mitochondrion, unclear	40.95	38.84
TraesCS1B01G190400.5	Wheat	mitochondrion	39.59	38.11

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072
ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF29	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735
SUPFAM:SSF53223	EnsemblPlantsGene:TraesCS3B01G128000	EnsemblPlants:TraesCS3B01G128000.1	TIGR:cd05312	SEG:seg	:

Description

No Description!

Coordinates

chr3B:+:106963092..106967725

Molecular Weight (calculated)

65207.2 Da

IEP (calculated)

6.129

GRAVY (calculated)

-0.165

Length

591 amino acids

Sequence
(BLAST)

001: MESAAETAEA EKEVAAEKEV AAAGGGVEDK YGEDRATEEL PVTPWAFSVA SGYTLLRDPH HNKGLAFTER ERDAHYLRGL LPPGVVSQDL QVKKIMHNLR
101: QYKVPLQRYV AMMDLQERNE RLFYKLLIDN VEELLPVVYT PTVGEACQKY GSIFRRPQGL YVSLRDKGKV IDVLRNWPER NIQVIVVTDG ERILGLGDLG
201: CQGMGIPVGK LSLYTALGGV RPSACLPITI DVGTNNEQLL NDEFYIGLRQ RRATGEEYHE LMEEFMDAVK QIYGEKVLIQ FEDFANHNAF DLLAKYSKSH
301: LVFNDDIQGT ASVVLAGLLS SLKVVGGTLA EHTYLFLGAG EAGTGIAELI ALEISKQTNA PIEECRKKVF LVDSKGLIVS SRKNSLQPFK TSWAHEREPV
401: TTLLDAIKSI RPTVLIGTSG VGRAFTKEVI EAMASFNERP VIFSLSNPTS HSECTAEEAY KWTKGRAVFA SGSPFDPVEY DGKIHVPGQA NNAYIFPGFG
501: LGVVISGAIR VHEDMLLAAS ETLAAQATKE NFDKGSIFPP FTNIRKISAL IAASVAAKAY ELGLATRLPR PRDLEKYAES CMYTPVYRSY R

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.