CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	EES01073	AT2G42580.1	19000166
AT5G11670.1	EES02247	AT2G42580.1	19000166
AT5G11670.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21798	Sorghum	plastid	71.85	77.91
EES00150	Sorghum	plastid	69.59	77.36
TraesCS3B01G128000.1	Wheat	cytosol	61.67	73.77
Os01t0188400-01	Rice	plastid	66.62	73.71
TraesCS3D01G110700.1	Wheat	plastid	66.76	73.52
TraesCS3A01G108900.1	Wheat	golgi	66.76	72.84
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	19.09	71.81
EES19164	Sorghum	cytosol, peroxisome, plastid	56.86	70.53
VIT_04s0008g00180.t01	Wine grape	cytosol	56.86	68.72
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	55.59	66.5
KXG33287	Sorghum	cytosol	55.59	66.27
CDY61446	Canola	cytosol	55.02	66.16
Bra023336.1-P	Field mustard	cytosol	55.02	66.16
CDX91199	Canola	cytosol	54.88	65.99
CDX88203	Canola	cytosol	54.88	65.99
CDX80544	Canola	cytosol	54.88	65.99
Bra009866.1-P	Field mustard	cytosol	54.88	65.99
AT5G25880.1	Thale cress	cytosol	54.31	65.31
CDX78432	Canola	cytosol	54.17	65.14
CDX70409	Canola	cytosol	54.17	65.14
Bra006107.1-P	Field mustard	cytosol	54.17	65.14
AT5G11670.1	Thale cress	cytosol	54.17	65.14
HORVU3Hr1G019790.9	Barley	plastid	67.04	65.02
KRH52781	Soybean	mitochondrion	55.73	63.65
EES01460	Sorghum	cytosol	53.32	63.58
KRH62099	Soybean	mitochondrion	55.45	63.02
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	38.33	62.73
CDY02046	Canola	mitochondrion	42.43	53.67
PGSC0003DMT400008389	Potato	mitochondrion	16.83	44.91
KXG38219	Sorghum	mitochondrion	28.85	33.01
KXG36268	Sorghum	mitochondrion	28.57	32.48

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	UniProt:A0A1W0VVP6	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf
InterPro:Malic_OxRdtase	InterPro:NAD(P)-bd_dom_sf	EnsemblPlants:OQU86165	ProteinID:OQU86165	ProteinID:OQU86165.1	PFAM:PF00390
PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072	PANTHER:PTHR23406	PANTHER:PTHR23406:SF29	SMART:SM00919
SMART:SM01274	EnsemblPlantsGene:SORBI_3003G036000	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0009DC905D	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:3299322..3305357

Molecular Weight (calculated)

76437.9 Da

IEP (calculated)

9.010

GRAVY (calculated)

-0.256

Length

707 amino acids

Sequence
(BLAST)

001: MRARLGGSAS AATLGEPCAA GGGVYSPRRG ARGKEEPAAE SSYKGHGAPQ PTTKPRPRRP HHGPVHVRGT RGKLERAAPR PERARLLEHP RFPFLYEKIP
101: PSPPAFPSPR TLPAAKREEE EDASPVATAA PLRSSLPLSS PSPELDATMM SARTAAASPA SAWKRGGGRS EGGGSSCDGC RTYRNTLRRR AAAAKVRAVP
201: PKRVEAVAMG SAAETETQEE VEVAATGGVV EDPYGEDSAT EELPVTPWAF SVASGYTLLR DPHHNKGLAF TEKERDAHYL RGLLPPAVVS QELQIKKIMH
301: NLRQYQVPLQ RYMAMMDLQE RNERLFYKLL IDNVEELLPV VYTPTVGEAC QKYGSIFRQP QGLYVSLRDK GRVLEVLRNW PQRDIQVICV TDGERILGLG
401: DLGCQGMGIP VGKLALYTAL GGVRPSACLP ITIDVGTNNE KLLNDEFYIG LRQKRATGKE YDELMEEFMA AIKQIYGEKV LIQGTASVVL AGLLAALKMV
501: GGTLAEQTYL FLGAGEAGTG IAELIALEIS KQTKAPIEEC RKKVWLVDSK SIKPTVLIGT SGVGRTFTKE VVEAMASFNE GRAVFASGSP FAPVEYDGKT
601: FVPGQSNNAY IFPGLGLGLV ISGAVRVHED MLLAASAALA DQATEENFVT GSIFPPFTNI RKISAHIAAA VAAKAYELGL ATRLPPPRDL VKYAESCMYT
701: PVYRNYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.