Factsheet for TraesCS3A01G108900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G110700.1	Wheat	plastid	98.92	99.84
TraesCS3B01G128000.1	Wheat	cytosol	90.59	99.32
Os01t0188400-01	Rice	plastid	89.51	90.77
Zm00001d037961_P004	Maize	plastid	85.19	85.71
Zm00001d037962_P003	Maize	plastid	84.72	85.25
KXG21798	Sorghum	plastid	85.65	85.12
HORVU3Hr1G019790.9	Barley	plastid	95.06	84.5
TraesCS1A01G122500.1	Wheat	cytosol	73.92	84.04
Zm00001d000316_P001	Maize	plastid	75.31	80.93
VIT_04s0008g00180.t01	Wine grape	cytosol	72.99	80.85
EES00150	Sorghum	plastid	78.24	79.72
TraesCS3A01G285900.2	Wheat	cytosol	71.6	78.11
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	70.52	77.33
CDX91199	Canola	cytosol	69.29	76.36
Bra023336.1-P	Field mustard	cytosol	69.14	76.19
CDY61446	Canola	cytosol	69.14	76.19
CDX88203	Canola	cytosol	68.83	75.85
Bra009866.1-P	Field mustard	cytosol	68.83	75.85
Bra006107.1-P	Field mustard	cytosol	68.67	75.68
CDX80544	Canola	cytosol	68.67	75.68
CDX70409	Canola	cytosol	68.36	75.34
CDX78432	Canola	cytosol	68.36	75.34
AT5G11670.1	Thale cress	cytosol	68.21	75.17
KRH52781	Soybean	mitochondrion	71.6	74.96
AT5G25880.1	Thale cress	cytosol	67.75	74.66
KRH62099	Soybean	mitochondrion	71.6	74.6
TraesCS3A01G275600.2	Wheat	cytosol, peroxisome, plastid	64.66	73.77
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	47.38	71.06
OQU86165	Sorghum	mitochondrion	72.84	66.76
CDY02046	Canola	mitochondrion	54.17	62.79
PGSC0003DMT400008389	Potato	mitochondrion	21.3	52.08
TraesCS2A01G237000.1	Wheat	mitochondrion	37.5	39.0

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf
InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106
PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF29	SMART:SM00919	SMART:SM01274
SUPFAM:SSF51735	SUPFAM:SSF53223	EnsemblPlantsGene:TraesCS3A01G108900	EnsemblPlants:TraesCS3A01G108900.1	TIGR:cd05312	SEG:seg

Description

No Description!

Coordinates

chr3A:+:74781616..74786521

Molecular Weight (calculated)

70946.1 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.155

Length

648 amino acids

Sequence
(BLAST)

001: MLSARTAAAA SPAASLWKRG GGAGARGDGC TSCLEVRRRA AAVTVRAAQP KRVEAVAMES AAETAEAEKE VAAEKEVAAA GGGVEDKYGE DRATEELPVT
101: PWAFSVASGY TLLRDPHHNK GLAFTERERD AHYLRGLLPP GVVSQDLQVK KIMHNLRQYK VPLQRYVAMM DLQERNERLF YKLLIDNVEE LLPVVYTPTV
201: GEACQKYGSI FRRPQGLYVS LRDKGKVIDV LRNWPERNIQ VIVVTDGERI LGLGDLGCQG MGIPVGKLSL YTALGGVRPS ACLPITIDVG TNNERLLNDE
301: FYIGLRQRRA TGEEYHELME EFMDAVKQIY GEKVLIQFED FANHNAFDLL AKYSKSHLVF NDDIQGTASV VLAGLLSSLK VVGGTLAEHT YLFLGAGEAG
401: TGIAELIALE ISKQTNAPIE ECRKKVFLVD SKGLIVSSRK NSLQPFKTSW AHEREPVTTL LDAIKSIRPT VLIGTSGVGR AFTKEVIEAM ASFNERPVIF
501: SLSNPTSHSE CTAEEAYKWT QGRAVFASGS PFDPVEYDGK IRVPGQANNA YIFPGFGLGV VISGAIRVHE DMLLAASETL AAQATQENFD KGSIFPPFTN
601: IRKISALIAA SVAAKAYELG LATRLPRPRD LEKYAESCMY TPVYRSYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.