CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	EES01073	AT2G42580.1	19000166
AT5G11670.1	EES02247	AT2G42580.1	19000166
AT5G11670.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037961_P004	Maize	plastid	93.56	94.72
Zm00001d037962_P003	Maize	plastid	93.1	94.25
TraesCS3B01G128000.1	Wheat	cytosol	79.45	87.65
Os01t0188400-01	Rice	plastid	85.58	87.32
TraesCS3D01G110700.1	Wheat	plastid	85.12	86.45
EES00150	Sorghum	plastid	83.74	85.85
TraesCS3A01G108900.1	Wheat	golgi	85.12	85.65
EES19164	Sorghum	cytosol, peroxisome, plastid	72.24	82.63
VIT_04s0008g00180.t01	Wine grape	cytosol	72.09	80.34
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	70.25	77.5
KXG33287	Sorghum	cytosol	69.63	76.56
CDX91199	Canola	cytosol	69.02	76.53
CDY61446	Canola	cytosol	68.86	76.36
Bra023336.1-P	Field mustard	cytosol	68.86	76.36
CDX88203	Canola	cytosol	68.71	76.19
Bra009866.1-P	Field mustard	cytosol	68.71	76.19
CDX80544	Canola	cytosol	68.56	76.02
AT5G25880.1	Thale cress	cytosol	68.1	75.51
Bra006107.1-P	Field mustard	cytosol	68.1	75.51
AT5G11670.1	Thale cress	cytosol	68.1	75.51
CDX78432	Canola	cytosol	67.94	75.34
CDX70409	Canola	cytosol	67.94	75.34
KRH52781	Soybean	mitochondrion	71.47	75.28
HORVU3Hr1G019790.9	Barley	plastid	84.05	75.17
KRH62099	Soybean	mitochondrion	71.32	74.76
EES01460	Sorghum	cytosol	66.72	73.36
OQU86165	Sorghum	mitochondrion	77.91	71.85
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	20.55	71.28
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	47.09	71.06
CDY02046	Canola	mitochondrion	54.91	64.04
PGSC0003DMT400008389	Potato	mitochondrion	21.32	52.45
KXG38219	Sorghum	mitochondrion	37.12	39.16
KXG36268	Sorghum	mitochondrion	36.5	38.26

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	UniProt:A0A1B6P7V2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	EnsemblPlants:KXG21798
ProteinID:KXG21798	ProteinID:KXG21798.1	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072
ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF29	SMART:SM00919	SMART:SM01274	EnsemblPlantsGene:SORBI_3009G108700
SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0003C68B2B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:43545770..43551420

Molecular Weight (calculated)

71539.7 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.196

Length

652 amino acids

Sequence
(BLAST)

001: MISARTAASP ASPASAWKRG GGRSEVGGGS SCDGCRTYRN TLRRSAAAAK VRAVPPRRVE AVAMGSAAET EKEKEEQQEV VAGAGGLVED HYDEDSAAEE
101: VPIMPWAFSV ASGYTLLRDP HHNKGLAFTE KERDAHHLRG LLPPAVVPQQ LQVKKIMHNL RQYQVPLQRY MAMMDLQERN ERLFYKLLID NVEELLPVVY
201: TPTVGEACQK YGSIFRQPQG LYVSLRDKGK VLEVLRNWPH RNIEVICVTD GERILGLGDL GSQGMGIPVG KLALYTALGG VRPSACLPIT IDVGTNNEKL
301: LNDEFYIGLR QKRATGEEYH ELMEEFMAAV KQIYGEKVLV QFEDFANHNA FDLLAKYSKS HLVFNDDIQG TASVVLAGVL AALKVVGGTL AEHTYLFLGA
401: GEAGTGIAEL IALEISKQTK TPIEECRKKV WLVDSKGLIV DSRKNSLQSF KKPWAHEHEP LTTLYDAVQS IKPTVLIGTS GVGRTFTKEV VEAMASFNER
501: PIIFSLSNPT SHSECTAEEA YNWTQGRAIF ASGSPFDPVE YDGKIFVPGQ ANNAYIFPGF GLGLVISGAI RVHEDMLLAA SEALAGQATQ ENFDKGSIFP
601: PFTNIRKISA RIAAAVAAKA YELGLATRLP PPRDLVKYAE SCMYTPVYRN YR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.