CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	KRH22291	AT2G42580.1	19000166
AT5G11670.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62099	Soybean	mitochondrion	96.77	96.3
VIT_04s0008g00180.t01	Wine grape	cytosol	82.23	87.01
Os05t0186300-01	Rice	cytosol, plasma membrane	77.71	84.39
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	80.13	83.93
PGSC0003DMT400077452	Potato	cytosol	79.97	83.76
Zm00001d037693_P003	Maize	extracellular	76.9	83.51
TraesCS1B01G141700.1	Wheat	cytosol	76.9	83.51
TraesCS1A01G122500.1	Wheat	cytosol	76.74	83.33
EES19164	Sorghum	cytosol, peroxisome, plastid	76.09	82.63
Zm00001d010358_P001	Maize	cytosol	75.93	82.46
KRH74263	Soybean	cytosol	77.87	81.56
KRH07269	Soybean	cytosol	77.71	81.39
CDX91199	Canola	cytosol	77.22	81.29
CDY61446	Canola	cytosol	77.06	81.12
CDX88203	Canola	cytosol	77.06	81.12
Bra023336.1-P	Field mustard	cytosol	77.06	81.12
Bra009866.1-P	Field mustard	cytosol	77.06	81.12
CDX80544	Canola	cytosol	76.74	80.78
AT5G11670.1	Thale cress	cytosol	76.25	80.27
CDX78432	Canola	cytosol	76.09	80.1
CDX70409	Canola	cytosol	76.09	80.1
Bra006107.1-P	Field mustard	cytosol	76.09	80.1
AT5G25880.1	Thale cress	cytosol	75.61	79.59
TraesCS1D01G123400.2	Wheat	mitochondrion	73.67	79.58
TraesCS3B01G128000.1	Wheat	cytosol	74.64	78.17
KRH12915	Soybean	cytosol	13.89	77.48
KRH60218	Soybean	mitochondrion	78.84	77.09
HORVU1Hr1G028030.16	Barley	mitochondrion	74.64	75.24
KRH09931	Soybean	mitochondrion, plastid	78.03	75.12
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	52.18	74.77
KRH23402	Soybean	nucleus	78.03	74.65
KRH41507	Soybean	cytosol, peroxisome, plastid	67.37	74.33
Os01t0188400-01	Rice	plastid	75.28	72.93
KRH44278	Soybean	plastid	75.44	72.85
Zm00001d037961_P004	Maize	plastid	75.44	72.52
Zm00001d037962_P003	Maize	plastid	75.28	72.36
TraesCS3D01G110700.1	Wheat	plastid	74.96	72.27
TraesCS3A01G108900.1	Wheat	golgi	74.96	71.6
KXG21798	Sorghum	plastid	75.28	71.47
Zm00001d036873_P001	Maize	cytosol	5.65	70.0
Zm00001d000316_P001	Maize	plastid	67.53	69.32
EES00150	Sorghum	plastid	70.76	68.87
Os02t0665000-01	Rice	cytosol	20.19	67.2
CDY02046	Canola	mitochondrion	60.26	66.73
HORVU3Hr1G019790.9	Barley	plastid	74.15	62.96
Zm00001d034292_P001	Maize	cytosol	26.98	60.95
KRH47214	Soybean	mitochondrion	55.9	60.17
KRH13473	Soybean	plastid	11.15	56.1
OQU86165	Sorghum	mitochondrion	63.65	55.73
HORVU5Hr1G018620.1	Barley	cytosol	8.24	43.97
KRH66385	Soybean	mitochondrion	38.45	38.26
KRH65116	Soybean	mitochondrion	37.32	38.24
KRH48207	Soybean	mitochondrion	37.16	38.08
KRH01213	Soybean	cytosol, plastid	17.45	38.03
KRH00689	Soybean	mitochondrion	36.51	37.67
KRH40505	Soybean	mitochondrion	36.51	37.6
Zm00001d003090_P001	Maize	mitochondrion	15.02	27.27
HORVU3Hr1G102340.13	Barley	plastid	10.34	26.67
Zm00001d051182_P001	Maize	cytosol	7.11	19.91

Protein Annotations

EntrezGene:100801564	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	EMBL:ACUP02003436	EnsemblPlantsGene:GLYMA_06G087800
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0004473
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006090
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016491	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	UniProt:K7KTZ6
EnsemblPlants:KRH52781	ProteinID:KRH52781	ProteinID:KRH52781.1	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf
InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106
PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF39	SMART:SM00919	SMART:SM01274
SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0002966EDA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:6788436..6793747

Molecular Weight (calculated)

68390.6 Da

IEP (calculated)

7.365

GRAVY (calculated)

-0.178

Length

619 amino acids

Sequence
(BLAST)

001: MMWLNRRRHN INTLQLPTKG GLGQKLLAVI MSSASLKEMR NGGEDYSNGH GGGGVRDLYG EDCATEDQLI TPWTFSVASG CSLLRDPRYN KGLAFTEGER
101: DAHYLRGLLP PAIFNQELQE KRLMHNLRQY EVPLHRYMAM MDLQERNERL FYKLLINNVE ELLPVVYTPT VGEACQKYGS IFRRPQGLYI SLKEKGKILE
201: VLKNWPEKSI QVIVVTDGER ILGLGDLGCQ GMGIPVGKLS LYTALGGVRP SSCLPITIDV GTNNEKLLND EFYIGLKQKR ATGQEYAELL EEFMHAVKQN
301: YGEKVLIQFE DFANHNAFDL LEKYSSSHLV FNDDIQGTAS VVLAGLLASL KLVGGTLVDH TFLFLGAGEA GTGIAELIAL EISKQTKAPV EETRKKIWLV
401: DSKGLIVSSR LESLQQFKKP WAHEHEPVKS LLDAVKAIKP TVLIGSSGAG KTFTKEVVET MASLNEKPLI LALSNPTSQS ECTAEEAYTW SKGKAIFASG
501: SPFDPVEYEG KLFVPGQANN AYIFPGFGLG LIISGAIRVR DEMLLAASEA LAAQVSQENY DKGLIYPPFS NIRKISAHIA AKVAAKAYDL GLASHLPRPK
601: DLVKYAESCM YSPGYRSYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.