Factsheet for PGSC0003DMT400077452

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	98.98	98.98
VIT_04s0008g00180.t01	Wine grape	cytosol	84.26	85.13
PGSC0003DMT400084201	Potato	cytosol	80.54	82.21
KRH52781	Soybean	mitochondrion	83.76	79.97
CDX80544	Canola	cytosol	79.36	79.76
CDX88203	Canola	cytosol	79.36	79.76
CDX91199	Canola	cytosol	79.36	79.76
Bra009866.1-P	Field mustard	cytosol	79.36	79.76
KRH62099	Soybean	mitochondrion	83.76	79.58
Bra023336.1-P	Field mustard	cytosol	79.02	79.42
CDX78432	Canola	cytosol	79.02	79.42
CDY61446	Canola	cytosol	79.02	79.42
Bra006107.1-P	Field mustard	cytosol	79.02	79.42
CDX70409	Canola	cytosol	78.68	79.08
AT5G25880.1	Thale cress	cytosol	78.68	79.08
AT5G11670.1	Thale cress	cytosol	78.51	78.91
PGSC0003DMT400000961	Potato	cytosol	77.83	78.1
PGSC0003DMT400006726	Potato	plastid	81.05	74.61
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	54.15	74.07
PGSC0003DMT400068027	Potato	plastid	79.36	73.28
CDY02046	Canola	mitochondrion	63.45	67.08
PGSC0003DMT400043836	Potato	cytosol	25.72	63.33
PGSC0003DMT400008389	Potato	mitochondrion	23.18	51.7
PGSC0003DMT400000066	Potato	mitochondrion	39.76	37.48

Protein Annotations

EntrezGene:102589524	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	UniProt:M1CYF9
InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00390	PFAM:PF03949	EnsemblPlantsGene:PGSC0003DMG400030121	PGSC:PGSC0003DMG400030121	EnsemblPlants:PGSC0003DMT400077452	PIRSF:PIRSF000106
PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF36	SMART:SM00919	SMART:SM01274
SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI000294B641	RefSeq:XP_006364722.1	RefSeq:XP_015159558.1	RefSeq:XP_015159559.1
SEG:seg	:	:	:	:	:

Description

Malic enzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400030121]

Coordinates

chr8:-:38178397..38184857

Molecular Weight (calculated)

65316.7 Da

IEP (calculated)

5.952

GRAVY (calculated)

-0.128

Length

591 amino acids

Sequence
(BLAST)

001: MESTLKELSN GESVLDIKDK CGVAGGVEDM YGEDRATEDQ TITPWTFSVA SGYSLLRDPH YNKGLAFTEA ERDAHYLRGL LPPSVSSQQL QEKKVMHNLR
101: QYQVPLQRYM AMMDLQERNE RLFYKLLIDN VEELLPVVYT PTVGEACQKY GSIFRRPQGL FISLKEKGKI LEVLKNWPEK SIHVIVVTDG ERILGLGDLG
201: CQGMGIPVGK LSLYTALGGV RPSVCLPITI DVGTNNQKLL DDEFYIGLKQ KRATGQEYAE LLEEFMSAVK QNYGEKVLIQ FEDFANHNAF ELLAKYRTTH
301: LVFNDDIQGT ASVVLAGLIA SLKLLGGTLA DHTFLFLGAG EAGTGIAELI ALEITRKTSV PLEEARKKIW LVDSKGLIVS SRVESLQHFK KPWAHDHEPV
401: KELIDAVKAI KPTVLIGTSG VGKTFTKEVV EAMASLNPKP LIMALSNPTS QAECTADEAY TWSKGHAIFA SGSPFDPVEF EGRTFVSGQA NNAYVFPGFG
501: LGIIMSGTIR VHDDMLLAAS EALASEVTED DYLKGRIYPP FTNIRKISAH IAAEVAAKAY ELGLATRLPR PSDLVKYAES CMYTPLYRSY R

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.