Factsheet for PGSC0003DMT400000961

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084201	Potato	cytosol	83.87	85.32
KXG33287	Sorghum	cytosol	79.46	78.92
TraesCS3A01G285900.2	Wheat	cytosol	78.78	78.11
PGSC0003DMT400077452	Potato	cytosol	78.1	77.83
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	24.79	77.66
PGSC0003DMT400043836	Potato	cytosol	30.56	75.0
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	76.23	70.38
TraesCS3D01G285700.2	Wheat	plastid	78.78	70.2
Os01t0723400-04	Rice	plastid	76.23	69.83
PGSC0003DMT400068027	Potato	plastid	75.04	69.06
PGSC0003DMT400006726	Potato	plastid	74.36	68.22
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	79.46	66.2
VIT_16s0039g00580.t01	Wine grape	cytosol	5.43	62.75
PGSC0003DMT400008389	Potato	mitochondrion	25.98	57.74
VIT_00s0342g00030.t01	Wine grape	cytosol	5.94	56.45
VIT_16s0039g01050.t01	Wine grape	cytosol	5.94	55.56
VIT_00s0183g00140.t01	Wine grape	cytosol	7.3	55.13
VIT_00s0279g00080.t01	Wine grape	cytosol	12.9	53.15
VIT_16s0115g00440.t01	Wine grape	cytosol	12.73	52.45
PGSC0003DMT400000066	Potato	mitochondrion	39.56	37.16

Protein Annotations

EntrezGene:102603300	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	UniProt:M0ZHN3
InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00390	PFAM:PF03949	EnsemblPlantsGene:PGSC0003DMG400000360	PGSC:PGSC0003DMG400000360	EnsemblPlants:PGSC0003DMT400000961	PIRSF:PIRSF000106
PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF26	SMART:SM00919	SMART:SM01274
SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI000296A24A	RefSeq:XP_006353488.1	SEG:seg	:

Description

Malic enzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400000360]

Coordinates

chr12:-:4109393..4115777

Molecular Weight (calculated)

65203.6 Da

IEP (calculated)

6.453

GRAVY (calculated)

-0.148

Length

589 amino acids

Sequence
(BLAST)

001: MDSKMEEKSE AVLDMSPTST VGGGVEDIYG EDRATEDQLI TPWTFVVSSG YNLLRDPRYN KGLAFTEKER DVHYLQGLLP PAVIPQELQE RRLMQSLRGY
101: EVPLNKYVVL MELEERNERL FYKLLIDNVE ELLPIVYTPT VGEACQKYGS IFKRPQGLYI SLKEKGRILE VLKNWPERKI QVIVVTDGER ILGLGDLGCQ
201: GMGIPVGKLA LYTALGGVRP SACLPITIDV GTNNEQLLKD EFYIGLRQKR ATGKEYYDFL DEFMKAVKQN YGEKVLVQYE DFANHNAFEL LAKYGTTHLV
301: FNDDIQGTAA VVLAGLVASL KLLGGSLADH TFLFFGAGEA GTGIAELIAL AISKKTKAPV EEARKNIWLV DSKGLIVNAR KESLQAHKKP WAHEHEPVNN
401: LLYTVKAIKP AAIIGTSGVG QTFTKEVIEV MASINKRPLI MALSNPTAQS ECTAEEAYTW SEGRAVFASG SPFPPVEYNN KLHIPSQANN CYIFPGFGFG
501: LVMAGAIRVH NDMLLAASEA LASQVTEEHY GKGMIYPPFG NIRKISAHIA ANVAAKAYEL GVATRLPQPA DLVKYAESCM YTPNYRSYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.