Factsheet for VIT_16s0039g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0342g00030.t01	Wine grape	cytosol	95.24	96.77
VIT_16s0039g00580.t01	Wine grape	cytosol	77.78	96.08
VIT_00s0183g00140.t01	Wine grape	cytosol	39.68	32.05
VIT_16s0115g00440.t01	Wine grape	cytosol	61.9	27.27
VIT_00s0279g00080.t01	Wine grape	cytosol	61.9	27.27
VIT_16s0039g00360.t01	Wine grape	extracellular	17.46	15.28
VIT_03s0038g00040.t01	Wine grape	extracellular	17.46	15.28
VIT_15s0045g00190.t01	Wine grape	extracellular	15.87	13.89
PGSC0003DMT400043836	Potato	cytosol	46.03	12.08
VIT_11s0016g03210.t01	Wine grape	cytosol	58.73	6.26
TraesCS3A01G285900.2	Wheat	cytosol	57.14	6.06
VIT_04s0008g00180.t01	Wine grape	cytosol	55.56	5.98
Solyc12g008430.1.1	Tomato	plastid	55.56	5.94
PGSC0003DMT400000961	Potato	cytosol	55.56	5.94
VIT_09s0002g03620.t01	Wine grape	cytosol	60.32	5.94
Solyc05g050120.2.1	Tomato	plastid	53.97	5.87
PGSC0003DMT400084201	Potato	cytosol	52.38	5.7
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	57.14	5.64
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	38.1	5.56
TraesCS3D01G285700.2	Wheat	plastid	57.14	5.45
Os01t0723400-04	Rice	plastid	55.56	5.44
Zm00001d043601_P003	Maize	mitochondrion	57.14	5.42
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	57.14	5.09
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	12.7	4.26
VIT_15s0021g00500.t01	Wine grape	mitochondrion	33.33	3.36
VIT_15s0046g03670.t01	Wine grape	mitochondrion	26.98	2.81

Protein Annotations

Gene3D:3.40.50.10380	MapMan:35.2	ProteinID:CCB57343	ProteinID:CCB57343.1	UniProt:F6HRN5	EMBL:FN596026
GO:GO:0003674	GO:GO:0003824	GO:GO:0004471	GO:GO:0004473	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006090	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_N_dom
InterPro:Malic_N_dom_sf	PFAM:PF00390	PANTHER:PTHR23406	PANTHER:PTHR23406:SF52	UniParc:UPI000210968A	ArrayExpress:VIT_16s0039g01050
EnsemblPlantsGene:VIT_16s0039g01050	EnsemblPlants:VIT_16s0039g01050.t01	:	:	:	:

Description

No Description!

Coordinates

chr16_random:-:568353..568666

Molecular Weight (calculated)

7283.5 Da

IEP (calculated)

6.482

GRAVY (calculated)

-0.451

Length

63 amino acids

Sequence
(BLAST)

1: FMSAVKQNYG EKVIQFEDST NRNAFELLAR YDTTHLVCNG DRNNICGSCR ASCHTEAIWW YFG

Best Arabidopsis Sequence Match ( AT2G19900.2 )
(BLAST)

001: MALTELQERN ERLFYKLLID NVEELLPIVY TPTVGEACQK FGSIFRRPQG LFISLKDKGK ILDVLKNWPE RNIQVIVVTD GERILGLGDL GCQGMGIPVG
101: KLALYSALGG VRPSACLPVT IDVGTNNEKL LNDEFYIGLR QKRATGQEYS ELLNEFMSAV KQNYGEKVLI QFEDFANHNA FELLAKYSDT HLVFNDDIQG
201: TASVVLAGLV SAQKLTNSPL AEHTFLFLGA GEAGTGIAEL IALYMSKQMN ASVEESRKKI WLVDSKGLIV NSRKDSLQDF KKPWAHEHEP VKDLLGAIKA
301: IKPTVLIGSS GVGRSFTKEV IEAMSSINER PLIMALSNPT TQSECTAEEA YTWSKGRAIF ASGSPFDPVE YEGKVFVSTQ ANNAYIFPGF GLGLVISGAI
401: RVHDDMLLAA AEALAGQVSK ENYEKGMIYP SFSSIRKISA QIAANVATKA YELGLAGRLP RPKDIVKCAE SSMYSPTYRL YR

Arabidopsis Description

NADP-ME1NADP-dependent malic enzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:O82191]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.