Factsheet for TraesCS3D01G285700.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G285900.2	Wheat	cytosol	88.35	98.32
KXG33287	Sorghum	cytosol	84.11	93.76
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	96.97	90.66
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	84.57	87.62
Zm00001d043601_P003	Maize	mitochondrion	85.63	85.24
Os01t0723400-04	Rice	plastid	80.18	82.43
Solyc05g050120.2.1	Tomato	plastid	70.35	80.31
PGSC0003DMT400084201	Potato	cytosol	70.2	80.14
PGSC0003DMT400000961	Potato	cytosol	70.2	78.78
Solyc12g008430.1.1	Tomato	plastid	69.59	78.1
TraesCS1D01G123400.2	Wheat	mitochondrion	67.47	77.84
TraesCS3D01G110700.1	Wheat	plastid	71.1	73.21
TraesCS3D01G275500.1	Wheat	cytosol	69.14	66.23
VIT_16s0039g00580.t01	Wine grape	cytosol	4.99	64.71
VIT_00s0183g00140.t01	Wine grape	cytosol	7.11	60.26
PGSC0003DMT400043836	Potato	cytosol	21.48	59.17
VIT_00s0342g00030.t01	Wine grape	cytosol	5.45	58.06
VIT_16s0039g01050.t01	Wine grape	cytosol	5.45	57.14
VIT_00s0279g00080.t01	Wine grape	cytosol	12.1	55.94
VIT_16s0115g00440.t01	Wine grape	cytosol	11.95	55.24
TraesCS1D01G164800.4	Wheat	mitochondrion, unclear	36.76	39.38
TraesCS2D01G234500.3	Wheat	mitochondrion	35.55	37.72

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072
ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF26	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735
SUPFAM:SSF53223	EnsemblPlantsGene:TraesCS3D01G285700	EnsemblPlants:TraesCS3D01G285700.2	TIGR:cd05312	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:394927138..394932479

Molecular Weight (calculated)

72911.5 Da

IEP (calculated)

7.394

GRAVY (calculated)

-0.216

Length

661 amino acids

Sequence
(BLAST)

001: MRARFLPLLA RQWQHRASGS SGARRGCCGR HQCGETRRGL AAAAAAARWW HVGRRGFVAS VEAGAKGEME STMKEIRGGG APCVLDMDDA ATVGGGVEDT
101: YGEDRATEEQ LVTPWTVSVA SGYNLLRDPR YNKGLAFTEK ERETHYLRGL LPPAVTSQEL QERKIMHNIR QYQLPLQRYM AMMDLQEGNE RLFYKLLIDN
201: VEELLPIVYT PTVGEACQKY GSIFSRPQGL YISLKEKGKI LEVLKNWPER SIQVIVVTDG ERILGLGDLG CQGMGIPVGK LSLYTALGGV RPSACLPITL
301: DVGTNNEELL NDEFYIGLRQ RRVTGQEYAD FLHEFMAAVK QNYGEKVLIQ FEDFANHNAF DLLARYGTTH LVFNDDIQGT ASVVLAGLVA ALKLVGGTLA
401: EHTYLFLGAG EAGTGIAELI ALEMSRQTKT PIDECRKKIW LVDSKGLIVS TRKESLQHFK KPWAHEHEHV GNLLDAVNAI KPTVLIGTSG KGQTFTQEVV
501: EAISSFNEMP IILALSNPTS QAECTAEQAY TWSKGRAVFA TGSPFDPVEY NGKTHVPGQA NNAYIFPGFG LGVVMSGAIR VHDDMLLAAS EALAQQVTQE
601: NFDKGLIYPP FSNIRKISAH IAANVAARAY ELGLASRRPR PKDLVKYAES CMYSPIYRNY R

Best Arabidopsis Sequence Match ( AT5G25880.1 )
(BLAST)

001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG LASNLPRPKD LVKMAESCMY SPVYRNFR

Arabidopsis Description

NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.