Factsheet for PGSC0003DMT400043836

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g00580.t01	Wine grape	cytosol	10.83	50.98
VIT_00s0183g00140.t01	Wine grape	cytosol	15.83	48.72
VIT_00s0342g00030.t01	Wine grape	cytosol	12.08	46.77
VIT_16s0039g01050.t01	Wine grape	cytosol	12.08	46.03
VIT_16s0115g00440.t01	Wine grape	cytosol	22.92	38.46
VIT_00s0279g00080.t01	Wine grape	cytosol	22.5	37.76
Solyc12g008430.1.1	Tomato	plastid	76.25	31.07
PGSC0003DMT400000961	Potato	cytosol	75.0	30.56
PGSC0003DMT400084201	Potato	cytosol	65.42	27.12
PGSC0003DMT400077452	Potato	cytosol	63.33	25.72
PGSC0003DMT400008389	Potato	mitochondrion	27.92	25.28
KXG33287	Sorghum	cytosol	61.25	24.79
TraesCS3A01G285900.2	Wheat	cytosol	59.58	24.07
Os01t0723400-04	Rice	plastid	60.83	22.71
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	60.0	22.57
PGSC0003DMT400068027	Potato	plastid	57.92	21.72
PGSC0003DMT400006726	Potato	plastid	57.5	21.5
TraesCS3D01G285700.2	Wheat	plastid	59.17	21.48
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	59.58	20.23
Zm00001d042392_P001	Maize	plastid	20.83	19.38
PGSC0003DMT400000066	Potato	mitochondrion	32.08	12.28
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	5.0	6.38

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:50.1.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0046872
GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	UniProt:M1BF94	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom_sf
InterPro:Malic_OxRdtase	InterPro:NAD(P)-bd_dom_sf	PFAM:PF03949	EnsemblPlantsGene:PGSC0003DMG400017014	PGSC:PGSC0003DMG400017014	EnsemblPlants:PGSC0003DMT400043836
PIRSF:PIRSF000106	PRINTS:PR00072	PANTHER:PTHR23406	PANTHER:PTHR23406:SF36	SMART:SM00919	SUPFAM:SSF51735
SUPFAM:SSF53223	UniParc:UPI000295C172	SEG:seg	:	:	:

Description

Malic enzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400017014]

Coordinates

chr5:+:23304195..23306953

Molecular Weight (calculated)

26770.8 Da

IEP (calculated)

6.163

GRAVY (calculated)

-0.236

Length

240 amino acids

Sequence
(BLAST)

001: MRRGALGALP TNLEYYDFLD EFTKAVKQNY GENSCIDFAN HNAFELLAKY GTTHLVFNDD IQGTTVVLLV GLVASLKLLG GSLADHTFLF FGAREERLEL
101: SLEYQKNVVV EEARKNIWPV DSKGLIVNAR KESLQAHKKP WAHEHEPVNN LLDTVKAINP AAIIGTSGVG RTFTKKVIEA MASINKRPLI MAFSNPTAQS
201: ECTTEEAYTW SERVELSSQV EVPFPSVEYN NKLHNPSQVC

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.