Factsheet for Solyc12g008430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050120.2.1	Tomato	plastid	84.55	86.01
KXG33287	Sorghum	cytosol	79.12	78.58
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	78.1	77.83
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	24.62	77.13
TraesCS3A01G285900.2	Wheat	cytosol	77.76	77.1
PGSC0003DMT400043836	Potato	cytosol	31.07	76.25
Os01t0723400-04	Rice	plastid	76.06	69.67
TraesCS3D01G285700.2	Wheat	plastid	78.1	69.59
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	75.21	69.44
Solyc12g044600.2.1	Tomato	plastid	74.7	68.75
Solyc03g120990.2.1	Tomato	plastid	73.85	67.76
Solyc08g066290.2.1	Tomato	cytosol	8.15	66.67
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	78.27	65.21
VIT_16s0039g00580.t01	Wine grape	cytosol	5.43	62.75
VIT_00s0342g00030.t01	Wine grape	cytosol	5.94	56.45
VIT_16s0039g01050.t01	Wine grape	cytosol	5.94	55.56
VIT_00s0183g00140.t01	Wine grape	cytosol	7.3	55.13
VIT_00s0279g00080.t01	Wine grape	cytosol	12.73	52.45
VIT_16s0115g00440.t01	Wine grape	cytosol	12.56	51.75
Solyc01g094200.2.1	Tomato	plastid	39.39	38.6
Solyc08g013860.2.1	Tomato	plastid	39.9	37.54
Zm00001d042392_P001	Maize	plastid	15.11	34.5

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0004473	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006090	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	UniProt:K4DBT1	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf
InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106
PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF26	SMART:SM00919	SMART:SM01274
SUPFAM:SSF51735	SUPFAM:SSF53223	EnsemblPlantsGene:Solyc12g008430.1	EnsemblPlants:Solyc12g008430.1.1	UniParc:UPI0002769404	SEG:seg

Description

Malic enzyme [Source:UniProtKB/TrEMBL;Acc:K4DBT1]

Coordinates

chr12:+:1860772..1866562

Molecular Weight (calculated)

65163.5 Da

IEP (calculated)

6.312

GRAVY (calculated)

-0.153

Length

589 amino acids

Sequence
(BLAST)

001: MDSKMKEKSE AVLDMSPKST VEGGVEDIYG EDCATENQLI TPWAFVVSSG YNLLRDPRYN KGLAFTENER DVHYLRGLLP PAIIPQELQE KRLMQSLRRY
101: EVPLNKYVAL MELEERNERL FYKLLIDNVE ELLPIVYTPT VGEACQKYGS IFKRSQGLYI SLKEKGRILE VLKNWPERKI QVIVVTDGER ILGLGDLGCQ
201: GMGIPVGKLA LYTALGGVRP SACLPITIDV GTNNEQLLED EFYIGLRQKR VTGKEYYDFL DEFMKAVKQN YGEKVLVQYE DFANHNAFEL LAKYGTTHLV
301: FNDDIQGTAA VVLAGLVASL KLLGGSLADH TFLFFGAGEA GTGIAELIAL AISKKSNAPV EEARKNIWLV DSKGLIVNAR KESLQAHKKP WAHEHEPVNN
401: LLDTVKAIKP AAIIGTSGVG QTFTKEVIEA MASINKRPLI MALSNPTAQS ECTAEEAYTW SEGRAVFASG SPFPSVEYNN KLHIPSQANN CYIFPGFGFG
501: LVMAGAIRVH NDMLLAASEA LAGQVTEEHY GKGMIYPPFG NIRKISAHIA ANVAAKAYEL GVATRLPQPA DLVKYAESCM YTPNYRSYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.