Factsheet for Solyc03g120990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006726	Potato	plastid	96.42	96.42
Solyc12g044600.2.1	Tomato	plastid	85.98	86.25
Solyc08g066290.2.1	Tomato	cytosol	9.35	83.33
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	74.61	81.05
VIT_09s0002g03620.t01	Wine grape	cytosol	79.44	79.69
Solyc05g050120.2.1	Tomato	plastid	70.09	77.72
Solyc12g008430.1.1	Tomato	plastid	67.76	73.85
Solyc08g013860.2.1	Tomato	plastid	38.32	39.3
Solyc01g094200.2.1	Tomato	plastid	35.2	37.6

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0004473	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006090	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	UniProt:K4BMP8	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf
InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106
PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF39	SMART:SM00919	SMART:SM01274
SUPFAM:SSF51735	SUPFAM:SSF53223	EnsemblPlantsGene:Solyc03g120990.2	EnsemblPlants:Solyc03g120990.2.1	UniParc:UPI0002766F54	SEG:seg

Description

Malic enzyme [Source:UniProtKB/TrEMBL;Acc:K4BMP8]

Coordinates

chr3:+:69215082..69220211

Molecular Weight (calculated)

70944.4 Da

IEP (calculated)

7.592

GRAVY (calculated)

-0.178

Length

642 amino acids

Sequence
(BLAST)

001: MFSLNGTNFP NNSLSGVSRC LTQSRKRVSF PMVVVSVNPN GRSADRNVSV LMENTLKEMK ENAPVIDEDS ESTVTGGVGD VYGEDTATED QTITPWNFSV
101: ASGYSLLRNP HYNKGLAFSE KERDSHYLRG LLPPVVFSHE LQVKKLMNNL RQYDVPLQRY MAMMDLQERN ERLFYKLLME NVEELLPVVY TPTVGEACQK
201: YGSIFRRPQG LFISLKEKGK ILEVLKNWPE KKIQVIVVTD GERILGLGDL GCQGMGIPVG KLSLYTALGG IRPSSCLPVT IDVGTNNETL LKDEFYIGLR
301: QRRTRGQEYA ELLDEFMSAV KQTYGEKVLI QFEDFANHNA FDLLAKYGTS HLVFNDDIQG TASVVLAGIM AALNLVGGNL AQHRFLFLGA GEAGTGIAEL
401: IALEMSKQTG APLEESRKKT WMVDSKGLIV RSRMESLQHF KRPWAHDHEP VKELVNAVKL IKPTVLIGSS GTGKTFTKEV VQAMSTFNKK PIIFALSNPT
501: SQSECTAEEA YTWSEGRAIF ASGSPFTPVE YKGKVFVSGQ GNNAYIFPGL GLGLIISGAI RVHDDMLLAA SEALAAEVSR ENLEKGLIYP PFANIRKISA
601: HIAAKVAAKA YELGLATRLP QPDNLVAYAE SCMYSPSYRS YR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.