Factsheet for Solyc01g094200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
mitochondrion: 26471654
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26471654 doi

O López-Vidal, D Camejo, F Rivera-Cabrera, M Konigsberg, JM Villa-Hernández, JA Mendoza-Espinoza, LJ Pérez-Flores, F Sevilla, A Jiménez, F Díaz de León-Sánchez

Centro de Edafología y Biología Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, 30100 Murcia, Spain., Cátedra Amelia Sámano Bishop, Universidad Autónoma Metropolitana, Colegio de Ciencias y Humanidades, Plantel Casa Libertad Universidad Autónoma de la Ciudad de México, Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: fdls@xanum.uam.mx., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: omarlopezvidal@yahoo.com.mx.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc07g019530.2.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00570.1	Solyc07g019530.2.1	AT2G18876.1	21798944
AT4G00570.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT4G00570.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000066	Potato	mitochondrion	99.5	95.37
VIT_15s0046g03670.t01	Wine grape	mitochondrion	84.53	83.97
KRH48207	Soybean	mitochondrion	82.2	81.79
KRH65116	Soybean	mitochondrion	82.03	81.62
KRH00689	Soybean	mitochondrion	80.87	81.0
KRH40505	Soybean	mitochondrion	80.2	80.2
Bra037347.1-P	Field mustard	mitochondrion	78.2	80.07
CDY68746	Canola	mitochondrion	80.37	79.83
CDY51151	Canola	mitochondrion	80.37	79.57
CDX74340	Canola	mitochondrion	80.37	79.44
CDY07209	Canola	mitochondrion	80.37	79.31
GSMUA_Achr1P00210_001	Banana	mitochondrion	79.2	78.81
Bra000967.1-P	Field mustard	mitochondrion	80.37	77.9
AT4G00570.1	Thale cress	mitochondrion	78.2	77.43
KXG38219	Sorghum	mitochondrion	78.2	76.05
TraesCS1D01G164800.4	Wheat	mitochondrion, unclear	76.71	74.72
Os10t0503500-01	Rice	mitochondrion	76.71	74.35
TraesCS1B01G190400.5	Wheat	mitochondrion	74.54	72.96
Zm00001d013911_P001	Maize	mitochondrion	74.04	69.53
HORVU1Hr1G045720.1	Barley	plastid	76.71	63.41
Solyc08g013860.2.1	Tomato	plastid	64.73	62.14
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	39.27	39.93
Solyc05g050120.2.1	Tomato	plastid	38.44	39.9
Solyc12g008430.1.1	Tomato	plastid	38.6	39.39
Solyc12g044600.2.1	Tomato	plastid	38.44	36.09
Solyc03g120990.2.1	Tomato	plastid	37.6	35.2
Solyc08g066290.2.1	Tomato	cytosol	2.83	23.61

Protein Annotations

MapMan:2.3.9	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006090	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	UniProt:K4AZG1	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf
InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106
PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF32	SMART:SM00919	SMART:SM01274
SUPFAM:SSF51735	SUPFAM:SSF53223	EnsemblPlantsGene:Solyc01g094200.2	EnsemblPlants:Solyc01g094200.2.1	UniParc:UPI00027687AD	SEG:seg

Description

NAD-dependent malic enzyme 2, mitochondrial [Source:Projected from Arabidopsis thaliana (AT4G00570) UniProtKB/Swiss-Prot;Acc:Q8L7K9]

Coordinates

chr1:+:85760421..85771182

Molecular Weight (calculated)

66289.0 Da

IEP (calculated)

6.173

GRAVY (calculated)

-0.107

Length

601 amino acids

Sequence
(BLAST)

001: MWRVARSAAS TFRRTRRLST AISAPCIVHK RGADILHDPW FNKDTGFPMT ERDRLGLRGL LPPRVISFEQ QYDRFMESFR SLEKNTEGQP ESVVSLAKWR
101: ILNRLHDRNE TLYYRVLIDN IKDFAPIIYT PTVGLVCQNY SGLFRRPRGM YFSAKDKGEM MSMIFNWPST QVDMIVLTDG SRILGLGDLG VQGIGIPIGK
201: LDMYVAAAGI NPQRVLPVML DVGTNNQKLL EDPLYLGLRQ PRLEGEEYLS IVDEFVEAVH ARWPKAVVQF EDFQAKWAFE TLDRYRKKFC MFNDDIQGTA
301: GVALAGLLGT VRAQGRPLTD FANQKIVVVG AGSAGLGVLK MALQAVSRMA GPSADPHFFL LDKNGLITKD RKDIDPAALP FAKAHHEIEG LGLQEGAGLA
401: EVVKKVKPHV LLGLSGVGGI FHEEVLRAMK ESDSVRPAIF AMSNPTNNAE CCPVDAFKLA GEDIVFASGS PFANVDLGNG KIGHVNQANN MYLFPGIGLG
501: ALLSGARNIS DTMLEAAAEC LASYMSDDEI NRGILYPSID DIRDITAEVG AAVLRAAVAE DLAEGHGDVG VRELQHMSKE ETIEHVRENM WYPVYGPLVH
601: E

Best Arabidopsis Sequence Match ( AT4G00570.1 )
(BLAST)

001: MMWKNIAGLS KAAAAARTHG SRRCFSTAIP GPCIVHKRGA DILHDPWFNK DTGFPLTERD RLGIRGLLPP RVMTCVQQCD RFIESFRSLE NNTKGEPENV
101: VALAKWRMLN RLHDRNETLY YRVLIDNIKD FAPIIYTPTV GLVCQNYSGL YRRPRGMYFS AKDKGEMMSM IYNWPAPQVD MIVITDGSRI LGLGDLGVQG
201: IGIPIGKLDM YVAAAGINPQ RVLPIMLDVG TNNEKLLQND LYLGVRQPRL EGEEYLEIID EFMEAAFTRW PKAVVQFEDF QAKWAFGTLE RYRKKFCMFN
301: DDVQGTAGVA LAGLLGTVRA QGRPISDFVN QKIVVVGAGS AGLGVTKMAV QAVARMAGIS ESEATKNFYL IDKDGLVTTE RTKLDPGAVL FAKNPAEIRE
401: GASIVEVVKK VRPHVLLGLS GVGGIFNEEV LKAMRESDSC KPAIFAMSNP TLNAECTAAD AFKHAGGNIV FASGSPFENV ELENGKVGHV NQANNMYLFP
501: GIGLGTLLSG ARIVTDGMLQ AASECLASYM TDEEVQKGIL YPSINNIRHI TAEVGAAVLR AAVTDDIAEG HGDVGPKDLS HMSKEDTVNY ITRNMWFPVY
601: SPLVHEK

Arabidopsis Description

NAD-ME2NAD-dependent malic enzyme 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7K9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.