Factsheet for Solyc05g050120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 2
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084201	Potato	cytosol	99.14	99.14
Solyc12g008430.1.1	Tomato	plastid	86.01	84.55
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	82.38	80.71
KXG33287	Sorghum	cytosol	81.35	79.43
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	25.56	78.72
TraesCS3A01G285900.2	Wheat	cytosol	80.31	78.28
Solyc12g044600.2.1	Tomato	plastid	79.27	71.72
Os01t0723400-04	Rice	plastid	78.93	71.07
TraesCS3D01G285700.2	Wheat	plastid	80.31	70.35
Solyc03g120990.2.1	Tomato	plastid	77.72	70.09
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	77.2	70.06
Solyc08g066290.2.1	Tomato	cytosol	8.29	66.67
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	80.48	65.91
VIT_16s0039g00580.t01	Wine grape	cytosol	5.53	62.75
VIT_00s0342g00030.t01	Wine grape	cytosol	5.87	54.84
VIT_16s0039g01050.t01	Wine grape	cytosol	5.87	53.97
VIT_00s0183g00140.t01	Wine grape	cytosol	7.08	52.56
VIT_00s0279g00080.t01	Wine grape	cytosol	12.78	51.75
VIT_16s0115g00440.t01	Wine grape	cytosol	12.61	51.05
Solyc08g013860.2.1	Tomato	plastid	41.62	38.5
Solyc01g094200.2.1	Tomato	plastid	39.9	38.44

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0004473	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006090	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0008948	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0046872
GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	UniProt:K4C144	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom
InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949
PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF36	SMART:SM00919
SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223	EnsemblPlantsGene:Solyc05g050120.2	EnsemblPlants:Solyc05g050120.2.1	UniParc:UPI0002766E8E
SEG:seg	:	:	:	:	:

Description

Malic enzyme [Source:UniProtKB/TrEMBL;Acc:K4C144]

Coordinates

chr5:+:60104588..60108900

Molecular Weight (calculated)

64116.2 Da

IEP (calculated)

5.856

GRAVY (calculated)

-0.133

Length

579 amino acids

Sequence
(BLAST)

001: MESALKDLST PTGGVEDVYG EDCATEDQCI TPWTIAVSSG YNLLRDPRYN KGLAFTERER DAHYLRGLLP PVISSQELQE KKLMQSIRQY DVPLHKYVAM
101: MELEERNERL FYKLLIDNVE ELLPIVYTPT VGEACQKYGS LFKRPQGLYI SLNEKGRILE VLKNWPEKSI QVIVVTDGER ILGLGDLGCQ GMGIPVGKLA
201: LYTALGGVRP SACLPITIDV GTNNEKLLND EFYIGLRQRR ATGQEYYDFL HEFMSAVKQN YGEKILVQFE DFANHNAFEL LAKYRTSHLV FNDDIQGTAS
301: VVLAGLIASL KLLGGALCDH TFLFLGAGEA GTGIAELIAL EISNKTNIPV EETRKKIWLV DSKGLIVSGR KETLQAFKKP WAHEHEPVNN LLDAVKAVKP
401: TVLIGTSGTG RTFTKEVVEA MACMNKRPLI MALSNPTSQA ECTAEEAYTW SEGRAVFASG SPFPSFEYDG KLNIPGQANN CYIFPGFGFG LVMSGTIRVH
501: DDMLLAASEA LAAQVTEEHY AKGMIYPPFA DIRKISAHIA ASVAAKAYEL GVATRLPRPA DLVKYAESCM YTPNYRSYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.