Factsheet for VIT_00s0183g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g00580.t01	Wine grape	cytosol	30.77	47.06
VIT_16s0039g00360.t01	Wine grape	extracellular	39.74	43.06
VIT_03s0038g00040.t01	Wine grape	extracellular	39.74	43.06
VIT_00s0342g00030.t01	Wine grape	cytosol	33.33	41.94
VIT_00s0279g00080.t01	Wine grape	cytosol	74.36	40.56
VIT_16s0115g00440.t01	Wine grape	cytosol	74.36	40.56
VIT_15s0045g00190.t01	Wine grape	extracellular	37.18	40.28
VIT_16s0039g01050.t01	Wine grape	cytosol	32.05	39.68
PGSC0003DMT400043836	Potato	cytosol	48.72	15.83
TraesCS3A01G285900.2	Wheat	cytosol	60.26	7.91
VIT_11s0016g03210.t01	Wine grape	cytosol	58.97	7.78
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	42.31	7.64
Solyc12g008430.1.1	Tomato	plastid	55.13	7.3
PGSC0003DMT400000961	Potato	cytosol	55.13	7.3
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	58.97	7.21
VIT_04s0008g00180.t01	Wine grape	cytosol	53.85	7.18
TraesCS3D01G285700.2	Wheat	plastid	60.26	7.11
PGSC0003DMT400084201	Potato	cytosol	52.56	7.08
Solyc05g050120.2.1	Tomato	plastid	52.56	7.08
VIT_09s0002g03620.t01	Wine grape	cytosol	57.69	7.03
Os01t0723400-04	Rice	plastid	55.13	6.69
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	60.26	6.65
Zm00001d043601_P003	Maize	mitochondrion	55.13	6.48
VIT_15s0046g03670.t01	Wine grape	mitochondrion	30.77	3.97
VIT_15s0021g00500.t01	Wine grape	mitochondrion	30.77	3.84
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	0.0	0.0

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:35.2	ProteinID:CCB59104	ProteinID:CCB59104.1	UniProt:F6HWP0
EMBL:FN596276	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0004473
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006090	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	PRINTS:PR00072
PANTHER:PTHR23406	PANTHER:PTHR23406:SF36	TMHMM:TMhelix	UniParc:UPI000210A49D	ArrayExpress:VIT_00s0183g00140	EnsemblPlantsGene:VIT_00s0183g00140
EnsemblPlants:VIT_00s0183g00140.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:8129922..8130549

Molecular Weight (calculated)

8720.5 Da

IEP (calculated)

10.462

GRAVY (calculated)

-0.119

Length

78 amino acids

Sequence
(BLAST)

1: MEKKVTRFED SANHNAFVLL ARYHTTHLIP NGDMQGTTFV VLLGLVVALK LSGGTLANHK FLFLGRRSRD WDSKAYGS

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.