Factsheet for VIT_03s0038g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0045g00190.t01	Wine grape	extracellular	94.44	94.44
VIT_16s0039g00360.t01	Wine grape	extracellular	94.44	94.44
VIT_00s0183g00140.t01	Wine grape	cytosol	43.06	39.74
VIT_00s0279g00080.t01	Wine grape	cytosol	52.78	26.57
VIT_16s0115g00440.t01	Wine grape	cytosol	51.39	25.87
VIT_00s0342g00030.t01	Wine grape	cytosol	15.28	17.74
VIT_16s0039g00580.t01	Wine grape	cytosol	12.5	17.65
VIT_16s0039g01050.t01	Wine grape	cytosol	15.28	17.46
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	48.61	8.1
VIT_11s0016g03210.t01	Wine grape	cytosol	55.56	6.77
VIT_04s0008g00180.t01	Wine grape	cytosol	51.39	6.32
VIT_09s0002g03620.t01	Wine grape	cytosol	54.17	6.09
VIT_15s0021g00500.t01	Wine grape	mitochondrion	26.39	3.04
VIT_15s0046g03670.t01	Wine grape	mitochondrion	22.22	2.64
CDY33808	Canola	endoplasmic reticulum, extracellular	0.0	0.0
HORVU3Hr1G068570.1	Barley	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.2	ProteinID:CCB60898	ProteinID:CCB60898.1	UniProt:F6I1T1	EMBL:FN596515
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0004473
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006090
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0051287	GO:GO:0055114	InterPro:Malic_NAD-bd	InterPro:Malic_OxRdtase
InterPro:NAD(P)-bd_dom_sf	PFAM:PF03949	PRINTS:PR00072	PANTHER:PTHR23406	PANTHER:PTHR23406:SF35	SUPFAM:SSF51735
TMHMM:TMhelix	UniParc:UPI000210AAA1	ArrayExpress:VIT_03s0038g00040	EnsemblPlantsGene:VIT_03s0038g00040	EnsemblPlants:VIT_03s0038g00040.t01	SEG:seg

Description

No Description!

Coordinates

chr3_random:+:30792..31105

Molecular Weight (calculated)

7566.6 Da

IEP (calculated)

7.357

GRAVY (calculated)

0.761

Length

72 amino acids

Sequence
(BLAST)

1: MEKKLYSLKI LQTVMLLSCL QDTTQLILSA MVIGTTSVVL AGLLAALKLS GGTLADHKFL FLGNGEAETG IA

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.