Factsheet for VIT_16s0115g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0279g00080.t01	Wine grape	cytosol	95.8	95.8
VIT_00s0183g00140.t01	Wine grape	cytosol	40.56	74.36
VIT_16s0039g00580.t01	Wine grape	cytosol	25.17	70.59
VIT_00s0342g00030.t01	Wine grape	cytosol	27.97	64.52
VIT_16s0039g01050.t01	Wine grape	cytosol	27.27	61.9
VIT_16s0039g00360.t01	Wine grape	extracellular	27.27	54.17
VIT_03s0038g00040.t01	Wine grape	extracellular	25.87	51.39
VIT_15s0045g00190.t01	Wine grape	extracellular	24.48	48.61
PGSC0003DMT400043836	Potato	cytosol	38.46	22.92
VIT_11s0016g03210.t01	Wine grape	cytosol	55.24	13.37
TraesCS3A01G285900.2	Wheat	cytosol	55.24	13.3
VIT_04s0008g00180.t01	Wine grape	cytosol	52.45	12.82
PGSC0003DMT400000961	Potato	cytosol	52.45	12.73
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	38.46	12.73
Solyc05g050120.2.1	Tomato	plastid	51.05	12.61
Solyc12g008430.1.1	Tomato	plastid	51.75	12.56
PGSC0003DMT400084201	Potato	cytosol	50.35	12.44
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	54.55	12.23
VIT_09s0002g03620.t01	Wine grape	cytosol	54.55	12.19
TraesCS3D01G285700.2	Wheat	plastid	55.24	11.95
Os01t0723400-04	Rice	plastid	53.15	11.82
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	55.24	11.17
Zm00001d043601_P003	Maize	mitochondrion	51.75	11.14
VIT_15s0046g03670.t01	Wine grape	mitochondrion	25.17	5.95
VIT_15s0021g00500.t01	Wine grape	mitochondrion	23.78	5.44
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	4.2	3.19

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CCB49991	ProteinID:CCB49991.1	UniProt:F6HCP6	EMBL:FN595518
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0004473
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006090
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0051287	GO:GO:0055114	InterPro:Malic_NAD-bd	InterPro:Malic_OxRdtase
InterPro:NAD(P)-bd_dom_sf	PFAM:PF03949	PRINTS:PR00072	PANTHER:PTHR23406	PANTHER:PTHR23406:SF36	SUPFAM:SSF51735
TIGR:TC55622	UniParc:UPI00021095D7	ArrayExpress:VIT_16s0115g00440	EnsemblPlantsGene:VIT_16s0115g00440	EnsemblPlants:VIT_16s0115g00440.t01	unigene:Vvi.10754

Description

No Description!

Coordinates

chr16:+:4480243..4480993

Molecular Weight (calculated)

15931.1 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.076

Length

143 amino acids

Sequence
(BLAST)

001: MSVVKQNYGE KVTRFEDYAN HNAFELLARY NTTHLVPNGD IQGTTYVVLS GLVAALKLFG GTLANHKFLF LGAGEAENDI TKLMALEMSK QIRCPCSHAV
101: YPIMDSTPVQ PQFTTSTGIE VYPMHPSWLW SFGFSLDTKA PWP

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.