CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, secretory
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33287	Sorghum	cytosol	84.57	26.81
PGSC0003DMT400084201	Potato	cytosol	78.72	25.56
Solyc05g050120.2.1	Tomato	plastid	78.72	25.56
EES19164	Sorghum	cytosol, peroxisome, plastid	77.13	25.44
PGSC0003DMT400000961	Potato	cytosol	77.66	24.79
Solyc12g008430.1.1	Tomato	plastid	77.13	24.62
EES01460	Sorghum	cytosol	75.0	23.78
KXG21798	Sorghum	plastid	71.28	20.55
EES00150	Sorghum	plastid	68.09	20.13
OQU86165	Sorghum	mitochondrion	71.81	19.09
VIT_16s0039g00580.t01	Wine grape	cytosol	3.72	13.73
KXG38219	Sorghum	mitochondrion	44.68	13.59
KXG36268	Sorghum	mitochondrion	44.15	13.34
VIT_16s0039g01050.t01	Wine grape	cytosol	4.26	12.7
VIT_00s0342g00030.t01	Wine grape	cytosol	3.72	11.29
PGSC0003DMT400043836	Potato	cytosol	6.38	5.0
VIT_00s0279g00080.t01	Wine grape	cytosol	3.19	4.2
VIT_16s0115g00440.t01	Wine grape	cytosol	3.19	4.2
VIT_00s0183g00140.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.10380	MapMan:50.1.1	UniProt:A0A1Z5RJW6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470
GO:GO:0004471	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_N_dom
InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	EnsemblPlants:OQU83656	ProteinID:OQU83656	ProteinID:OQU83656.1	PFAM:PF00390
PRINTS:PR00072	PANTHER:PTHR23406	PANTHER:PTHR23406:SF26	SMART:SM01274	EnsemblPlantsGene:SORBI_3005G154850	SUPFAM:SSF53223
UniParc:UPI000B8B9566	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:62653334..62655331

Molecular Weight (calculated)

20959.4 Da

IEP (calculated)

5.285

GRAVY (calculated)

-0.021

Length

188 amino acids

Sequence
(BLAST)

001: RIQSFPKIAT QLATVLSSPP SWAILFSHAV LLQEGNERLF YKLLIDNVEE LLPIVYTPTV GEACQKYGSI FSRPQGLYIS LKEKGKILEV LKNWPERSIQ
101: VIVVTDGEWI LGHGDLGCQG MGIPAKLSLY TALGGVRPSA CLPITLDVGT NNEELLNDEF YIGLRQRRAT GQEYTDFLQE FMSAVKQN

Best Arabidopsis Sequence Match ( AT2G19900.1 )
(BLAST)

001: MEKVTNSDLK SSVDGGVVDV YGEDSATIEH NITPWSLSVS SGYSLLRDPR YNKGLAFTEK ERDTHYLRGL LPPVVLDQKL QEKRLLNNIR QYQFPLQKYM
101: ALTELQERNE RLFYKLLIDN VEELLPIVYT PTVGEACQKF GSIFRRPQGL FISLKDKGKI LDVLKNWPER NIQVIVVTDG ERILGLGDLG CQGMGIPVGK
201: LALYSALGGV RPSACLPVTI DVGTNNEKLL NDEFYIGLRQ KRATGQEYSE LLNEFMSAVK QNYGEKVLIQ FEDFANHNAF ELLAKYSDTH LVFNDDIQGT
301: ASVVLAGLVS AQKLTNSPLA EHTFLFLGAG EAGTGIAELI ALYMSKQMNA SVEESRKKIW LVDSKGLIVN SRKDSLQDFK KPWAHEHEPV KDLLGAIKAI
401: KPTVLIGSSG VGRSFTKEVI EAMSSINERP LIMALSNPTT QSECTAEEAY TWSKGRAIFA SGSPFDPVEY EGKVFVSTQA NNAYIFPGFG LGLVISGAIR
501: VHDDMLLAAA EALAGQVSKE NYEKGMIYPS FSSIRKISAQ IAANVATKAY ELGLAGRLPR PKDIVKCAES SMYSPTYRLY R

Arabidopsis Description

NADP-ME1NADP-dependent malic enzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:O82191]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.