Factsheet for VIT_00s0342g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g00580.t01	Wine grape	cytosol	80.65	98.04
VIT_16s0039g01050.t01	Wine grape	cytosol	96.77	95.24
VIT_00s0183g00140.t01	Wine grape	cytosol	41.94	33.33
VIT_16s0115g00440.t01	Wine grape	cytosol	64.52	27.97
VIT_00s0279g00080.t01	Wine grape	cytosol	64.52	27.97
VIT_16s0039g00360.t01	Wine grape	extracellular	17.74	15.28
VIT_03s0038g00040.t01	Wine grape	extracellular	17.74	15.28
VIT_15s0045g00190.t01	Wine grape	extracellular	16.13	13.89
PGSC0003DMT400043836	Potato	cytosol	46.77	12.08
VIT_11s0016g03210.t01	Wine grape	cytosol	59.68	6.26
TraesCS3A01G285900.2	Wheat	cytosol	58.06	6.06
VIT_04s0008g00180.t01	Wine grape	cytosol	56.45	5.98
Solyc12g008430.1.1	Tomato	plastid	56.45	5.94
PGSC0003DMT400000961	Potato	cytosol	56.45	5.94
VIT_09s0002g03620.t01	Wine grape	cytosol	61.29	5.94
Solyc05g050120.2.1	Tomato	plastid	54.84	5.87
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	40.32	5.79
PGSC0003DMT400084201	Potato	cytosol	53.23	5.7
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	58.06	5.64
TraesCS3D01G285700.2	Wheat	plastid	58.06	5.45
Os01t0723400-04	Rice	plastid	56.45	5.44
Zm00001d043601_P003	Maize	mitochondrion	58.06	5.42
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	58.06	5.09
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	11.29	3.72
VIT_15s0021g00500.t01	Wine grape	mitochondrion	32.26	3.2
VIT_15s0046g03670.t01	Wine grape	mitochondrion	27.42	2.81

Protein Annotations

Gene3D:3.40.50.10380	MapMan:35.2	ProteinID:CCB62873	ProteinID:CCB62873.1	UniProt:F6I7F5	EMBL:FN596781
GO:GO:0003674	GO:GO:0003824	GO:GO:0004471	GO:GO:0004473	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006090	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_N_dom_sf
PANTHER:PTHR23406	PANTHER:PTHR23406:SF52	UniParc:UPI000210ABDB	ArrayExpress:VIT_00s0342g00030	EnsemblPlantsGene:VIT_00s0342g00030	EnsemblPlants:VIT_00s0342g00030.t01

Description

No Description!

Coordinates

chrUn:-:24495924..24496237

Molecular Weight (calculated)

7125.3 Da

IEP (calculated)

7.125

GRAVY (calculated)

-0.484

Length

62 amino acids

Sequence
(BLAST)

1: MSAVKQNYGE KVIQFEDSAN RNAFELLARY DTTHLVCNGD RNNICGSCRA SCRTEAIWWY FG

Best Arabidopsis Sequence Match ( AT2G19900.2 )
(BLAST)

001: MALTELQERN ERLFYKLLID NVEELLPIVY TPTVGEACQK FGSIFRRPQG LFISLKDKGK ILDVLKNWPE RNIQVIVVTD GERILGLGDL GCQGMGIPVG
101: KLALYSALGG VRPSACLPVT IDVGTNNEKL LNDEFYIGLR QKRATGQEYS ELLNEFMSAV KQNYGEKVLI QFEDFANHNA FELLAKYSDT HLVFNDDIQG
201: TASVVLAGLV SAQKLTNSPL AEHTFLFLGA GEAGTGIAEL IALYMSKQMN ASVEESRKKI WLVDSKGLIV NSRKDSLQDF KKPWAHEHEP VKDLLGAIKA
301: IKPTVLIGSS GVGRSFTKEV IEAMSSINER PLIMALSNPT TQSECTAEEA YTWSKGRAIF ASGSPFDPVE YEGKVFVSTQ ANNAYIFPGF GLGLVISGAI
401: RVHDDMLLAA AEALAGQVSK ENYEKGMIYP SFSSIRKISA QIAANVATKA YELGLAGRLP RPKDIVKCAE SSMYSPTYRL YR

Arabidopsis Description

NADP-ME1NADP-dependent malic enzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:O82191]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.