Factsheet for VIT_02s0012g02460.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 1
plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT5G11670.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g00180.t01	Wine grape	cytosol	83.33	61.54
Os05t0186300-01	Rice	cytosol, plasma membrane	72.22	54.74
Os02t0665000-01	Rice	cytosol	23.38	54.3
PGSC0003DMT400077452	Potato	cytosol	74.07	54.15
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	74.07	54.15
Zm00001d037693_P003	Maize	extracellular	70.6	53.51
TraesCS1A01G122500.1	Wheat	cytosol	69.68	52.81
CDX91199	Canola	cytosol	71.76	52.72
EES19164	Sorghum	cytosol, peroxisome, plastid	69.44	52.63
TraesCS1B01G141700.1	Wheat	cytosol	69.44	52.63
Zm00001d010358_P001	Maize	cytosol	69.44	52.63
CDY61446	Canola	cytosol	71.53	52.55
Bra023336.1-P	Field mustard	cytosol	71.53	52.55
Bra006107.1-P	Field mustard	cytosol	71.53	52.55
CDX78432	Canola	cytosol	71.3	52.38
AT5G11670.1	Thale cress	cytosol	71.3	52.38
CDX88203	Canola	cytosol	71.06	52.21
CDX70409	Canola	cytosol	71.06	52.21
Bra009866.1-P	Field mustard	cytosol	71.06	52.21
KRH52781	Soybean	mitochondrion	74.77	52.18
TraesCS3B01G128000.1	Wheat	cytosol	71.3	52.12
KRH62099	Soybean	mitochondrion	75.0	52.09
CDX80544	Canola	cytosol	70.83	52.04
TraesCS1D01G123400.2	Wheat	mitochondrion	68.75	51.83
VIT_11s0016g03210.t01	Wine grape	cytosol	70.83	51.78
AT5G25880.1	Thale cress	cytosol	69.68	51.19
Zm00001d034292_P001	Maize	cytosol	32.41	51.09
Os01t0188400-01	Rice	plastid	73.61	49.77
VIT_09s0002g03620.t01	Wine grape	cytosol	73.61	49.69
HORVU1Hr1G028030.16	Barley	mitochondrion	69.91	49.19
VIT_03s0038g00040.t01	Wine grape	extracellular	8.1	48.61
Zm00001d037961_P004	Maize	plastid	71.99	48.29
Zm00001d037962_P003	Maize	plastid	71.76	48.14
TraesCS3D01G110700.1	Wheat	plastid	71.3	47.98
TraesCS3A01G108900.1	Wheat	golgi	71.06	47.38
VIT_16s0039g00360.t01	Wine grape	extracellular	7.87	47.22
KXG21798	Sorghum	plastid	71.06	47.09
EES00150	Sorghum	plastid	67.82	46.07
Zm00001d036873_P001	Maize	cytosol	5.32	46.0
VIT_15s0045g00190.t01	Wine grape	extracellular	7.64	45.83
Zm00001d000316_P001	Maize	plastid	63.43	45.44
CDY02046	Canola	mitochondrion	58.56	45.26
VIT_16s0039g00580.t01	Wine grape	cytosol	5.32	45.1
HORVU3Hr1G019790.9	Barley	plastid	72.69	43.07
VIT_00s0183g00140.t01	Wine grape	cytosol	7.64	42.31
VIT_00s0342g00030.t01	Wine grape	cytosol	5.79	40.32
VIT_00s0279g00080.t01	Wine grape	cytosol	12.96	39.16
VIT_16s0115g00440.t01	Wine grape	cytosol	12.73	38.46
OQU86165	Sorghum	mitochondrion	62.73	38.33
VIT_16s0039g01050.t01	Wine grape	cytosol	5.56	38.1
HORVU5Hr1G018620.1	Barley	cytosol	8.8	32.76
VIT_15s0046g03670.t01	Wine grape	mitochondrion	34.72	24.79
VIT_15s0021g00500.t01	Wine grape	mitochondrion	35.42	24.48
HORVU3Hr1G102340.13	Barley	plastid	12.04	21.67
Zm00001d003090_P001	Maize	mitochondrion	15.97	20.23
Zm00001d051182_P001	Maize	cytosol	8.56	16.74

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	ProteinID:CBI33808	ProteinID:CBI33808.3	UniProt:D7TTP3
EMBL:FN596247	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471
GO:GO:0004473	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006090	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom
InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106
PRINTS:PR00072	PANTHER:PTHR23406	PANTHER:PTHR23406:SF52	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735
SUPFAM:SSF53223	UniParc:UPI0001BE43E0	ArrayExpress:VIT_02s0012g02460	EnsemblPlantsGene:VIT_02s0012g02460	EnsemblPlants:VIT_02s0012g02460.t01	SEG:seg

Description

No Description!

Coordinates

chr2:-:9406992..9411582

Molecular Weight (calculated)

48421.9 Da

IEP (calculated)

8.658

GRAVY (calculated)

0.107

Length

432 amino acids

Sequence
(BLAST)

001: MALLEGSLNT AIGASLLLVI RLLPLSLPPH VPHILHHIRT SGYTLLRDPH HNKGLAFTEK ERDAHYLRGL LPPAVLNQDL QEKRLMHNLR QYKVPLQRYM
101: AMMDFQERNE RLFYKLLIDN VEELLPVVYT PTVGEACQKY GSIFRRPQSL YIIDFFMGKI LEVLKNWPER SIQVIVVTNG ERILGLGDLG CQGMGIPVGK
201: LSLYTTLGGL HPSVCLPVTI DVGTNNEQLL KDEFYIGLKQ RRATGQEYAE LLHELMCAVK QNYGERVLIH VNFANHNAFE LLAKYSKTHL GTTSVVLAEL
301: IASLKLVGGS LAELTFLFLG AGEAGTGIAE LIALEISKQT KAPLEETRKK IWLVNSKGLI VHSRMESLQH FKKPWAHEHE PIRALVDAVQ SIKPTVLIGS
401: LGIGKTFTKE VVEAMTSFNF LTLLICMTLL IL

Best Arabidopsis Sequence Match ( AT5G11670.1 )
(BLAST)

001: MGSTPTDLPG EDVADNRSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYLTGLLPP VILSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI FRKPQGLYIS LNEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNDE FYIGLKQRRA TGQEYAEFLH EFMCAVKQNY GEKVLVQFED FANHNAFDLL SKYSDSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKKLADHT FLFLGAGEAG TGIAELIALK ISKETGAPIT ETRKKIWLVD SKGLIVSSRK ESLQHFKQPW AHEHKPVKDL
401: IGAVNAIKPT VLIGTSGVGQ TFTKEVVEAM ATNNEKPLIL ALSNPTSQAE CTAEQAYTWT KGRAIFGSGS PFDPVVYDGK TYLPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL AAQVTEEHYA NGLIYPPFSN IREISANIAA CVAAKTYDLG LASNLPRAKD LVKFAESSMY SPVYRNYR

Arabidopsis Description

NADP-ME2NADP-dependent malic enzyme 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.