Factsheet for TraesCS1D01G123400.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G141700.1	Wheat	cytosol	94.76	95.26
TraesCS1A01G122500.1	Wheat	cytosol	93.89	94.39
Os05t0186300-01	Rice	cytosol, plasma membrane	86.21	86.67
Zm00001d037693_P003	Maize	extracellular	83.07	83.51
HORVU1Hr1G028030.16	Barley	mitochondrion	89.35	83.39
EES19164	Sorghum	cytosol, peroxisome, plastid	82.37	82.81
Zm00001d010358_P001	Maize	cytosol	81.33	81.75
VIT_04s0008g00180.t01	Wine grape	cytosol	78.53	76.92
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	76.79	74.45
Bra009866.1-P	Field mustard	cytosol	76.27	74.32
CDX88203	Canola	cytosol	76.27	74.32
CDX80544	Canola	cytosol	76.09	74.15
KRH52781	Soybean	mitochondrion	79.58	73.67
CDX91199	Canola	cytosol	75.57	73.64
CDY61446	Canola	cytosol	75.39	73.47
Bra023336.1-P	Field mustard	cytosol	75.39	73.47
KRH62099	Soybean	mitochondrion	79.58	73.31
AT5G25880.1	Thale cress	cytosol	74.69	72.79
AT5G11670.1	Thale cress	cytosol	74.35	72.45
CDX70409	Canola	cytosol	74.0	72.11
CDX78432	Canola	cytosol	73.82	71.94
Bra006107.1-P	Field mustard	cytosol	73.82	71.94
TraesCS3D01G110700.1	Wheat	plastid	79.76	71.18
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	51.83	68.75
TraesCS3D01G285700.2	Wheat	plastid	77.84	67.47
CDY02046	Canola	mitochondrion	61.78	63.33
TraesCS3D01G275500.1	Wheat	cytosol	73.3	60.87
TraesCS2D01G234500.3	Wheat	mitochondrion	42.76	39.33
TraesCS1D01G164800.4	Wheat	mitochondrion, unclear	41.71	38.74

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072
ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF37	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735
SUPFAM:SSF53223	EnsemblPlantsGene:TraesCS1D01G123400	EnsemblPlants:TraesCS1D01G123400.2	TIGR:cd05312	SEG:seg	:

Description

No Description!

Coordinates

chr1D:-:125068364..125080620

Molecular Weight (calculated)

63316.3 Da

IEP (calculated)

6.917

GRAVY (calculated)

-0.188

Length

573 amino acids

Sequence
(BLAST)

001: MRPMPPPLKR ARRGPPVSGP CPLAGRQAGP SCSGHQLLRD PRHNKGLAFS EAERDAHYLR GLLPPAIVSQ EHQEKKIMHN LRSYTVPLHR YIAMMDLQER
101: NERLFYKLLI DNVEELLPVV YTPVVGEACQ KYGSIYRRPQ GLYISLKDKG KVLEVLKNWP ERSIQVIVVT DGERILGLGD LGCQGMGIPV GKLSLYTALG
201: GVRPSACLPI TIDVGTNNET LLNDEYYIGL RQRRATGEEY HELLQEFMNA VKQNYGEKVL VQFEDFANHN AFDLLAKYSK SHLVFNDDIQ GTASVVLAGL
301: LAALRMIGGG LVDQTYLFLG AGEAGTGIAE LIALEMSKHT ELPVDDCRKK IWLVDSKGLL VESRKESLQH FKKPFAHEHE ELKTLLEAVQ SIKPTVLIGT
401: SGVGKTFTQE VIEAMASFNE KPVIFSLSNP TSHSECTAEE AYTWSKGTAV FASGSPFDPV EYEGKTFVPG QSNNAYVFPG FGLGVVISGA IRVHDDMLLA
501: ASEALAEEAT QENFDKGLIF PPFTNIRKIS ASIAAKVAAK AYDLGLASRL PRPDDLVKYA ESCMYTPLYR SYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.