Factsheet for HORVU1Hr1G028030.16

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G093390.2
HORVU3Hr1G027650.2
HORVU3Hr1G054240.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	HORVU1Hr1G093390.2	AT2G42580.1	19000166
AT5G11670.1	HORVU3Hr1G027650.2	AT2G42580.1	19000166
AT5G11670.1	HORVU3Hr1G054240.2	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G122500.1	Wheat	cytosol	86.97	93.68
TraesCS1B01G141700.1	Wheat	cytosol	86.97	93.68
TraesCS1D01G123400.2	Wheat	mitochondrion	83.39	89.35
Os05t0186300-01	Rice	cytosol, plasma membrane	81.92	88.25
Zm00001d037693_P003	Maize	extracellular	78.34	84.39
EES19164	Sorghum	cytosol, peroxisome, plastid	77.85	83.86
Zm00001d010358_P001	Maize	cytosol	76.87	82.81
HORVU5Hr1G053200.1	Barley	endoplasmic reticulum, extracellular	8.31	78.46
VIT_04s0008g00180.t01	Wine grape	cytosol	74.59	78.29
CDX91199	Canola	cytosol	72.31	75.51
CDX88203	Canola	cytosol	72.15	75.34
CDY61446	Canola	cytosol	72.15	75.34
Bra023336.1-P	Field mustard	cytosol	72.15	75.34
Bra009866.1-P	Field mustard	cytosol	72.15	75.34
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	72.48	75.3
CDX80544	Canola	cytosol	71.99	75.17
KRH52781	Soybean	mitochondrion	75.24	74.64
AT5G11670.1	Thale cress	cytosol	71.34	74.49
KRH62099	Soybean	mitochondrion	75.41	74.44
AT5G25880.1	Thale cress	cytosol	71.01	74.15
CDX70409	Canola	cytosol	70.85	73.98
CDX78432	Canola	cytosol	70.68	73.81
Bra006107.1-P	Field mustard	cytosol	70.68	73.81
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	49.19	69.91
HORVU3Hr1G070850.1	Barley	mitochondrion	69.06	68.06
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	75.24	65.35
HORVU3Hr1G019790.9	Barley	plastid	77.36	65.16
CDY02046	Canola	mitochondrion	59.12	64.94
HORVU3Hr1G068570.1	Barley	cytosol	3.58	45.83
HORVU5Hr1G018620.1	Barley	cytosol	8.14	43.1
HORVU2Hr1G050980.2	Barley	mitochondrion, plastid	39.25	36.68
HORVU1Hr1G045720.1	Barley	plastid	38.27	32.32
HORVU3Hr1G102340.13	Barley	plastid	9.93	25.42

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	UniProt:A0A287F081	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:HORVU1Hr1G028030	EnsemblPlants:HORVU1Hr1G028030.16
InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331
PANTHER:PTHR23406	PANTHER:PTHR23406:SF37	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223
UniParc:UPI000B48762D	SEG:seg	:	:	:	:

Description

Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A287F081]

Coordinates

chrchr1H:-:147246924..147250480

Molecular Weight (calculated)

68009.6 Da

IEP (calculated)

6.928

GRAVY (calculated)

-0.200

Length

614 amino acids

Sequence
(BLAST)

001: TAFHPSIRPS TRLKKRRTRA RFKPGLVLRI ALLPSVRFRF RGREFEEMAG GGVEDAYGED RATEEQLVTP WSFSVASGHS LLRDPRHNKG LAFSEAERDA
101: HYLRGLLPPA IVSQEHQEKK IMHNLRQYTV PLQRYIAMMD LQERNERLFY KLLIDNVEEL LPVVYTPVVG EACQKYGSIY RRPQGLYISL KDKGKVLEVL
201: KNWPERSIQV IVVTDGERIL GLGDLGCQGM GIPVGKLSLY TALGGVRPSA CLPITIDVGT NNETLLNDEY YIGLRQRRAT GDEYHELLQE FMTAVKQNYG
301: EKVLVQFEDF ANHNAFDLLA KYSKSHLVFN DDIQGTASVV LAGLLAALKV IGGGLVDQTY LFLGAGEAGT GIAELIALEM SKHTDLPVDD CRKKIWLVDS
401: KGLLVESRKE SLQHFKKPFA HEHEELKTLL EAVQSIKPTV LIGTSGVGKT FTQEVIEAMA SFNEKPVIFS LSNPTSHSEC TAEEAYTWSK GTAVFASGSP
501: FDPVEYEGKT YVPGQSNNAY VFPGFGLGVV ISGAIRVHDD MLLAASEALA EQVTQENFDK GLIFPPFTNI RKISANIAAK VAAKAYDLGL ARTEPTNKIK
601: FPSPYASSSF TDAT

Best Arabidopsis Sequence Match ( AT5G25880.2 )
(BLAST)

001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG

Arabidopsis Description

NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.