Factsheet for TraesCS1A01G122500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G141700.1	Wheat	cytosol	99.12	99.12
TraesCS1D01G123400.2	Wheat	mitochondrion	94.39	93.89
Os05t0186300-01	Rice	cytosol, plasma membrane	90.53	90.53
Zm00001d037693_P003	Maize	extracellular	87.19	87.19
HORVU1Hr1G028030.16	Barley	mitochondrion	93.68	86.97
EES19164	Sorghum	cytosol, peroxisome, plastid	86.49	86.49
Zm00001d010358_P001	Maize	cytosol	85.09	85.09
VIT_04s0008g00180.t01	Wine grape	cytosol	82.28	80.17
TraesCS3A01G285900.2	Wheat	cytosol	81.93	78.62
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	80.88	78.0
Bra009866.1-P	Field mustard	cytosol	79.82	77.38
CDX88203	Canola	cytosol	79.82	77.38
CDX80544	Canola	cytosol	79.65	77.21
CDX91199	Canola	cytosol	79.3	76.87
KRH52781	Soybean	mitochondrion	83.33	76.74
CDY61446	Canola	cytosol	79.12	76.7
Bra023336.1-P	Field mustard	cytosol	79.12	76.7
KRH62099	Soybean	mitochondrion	83.33	76.37
AT5G25880.1	Thale cress	cytosol	78.42	76.02
AT5G11670.1	Thale cress	cytosol	78.07	75.68
CDX70409	Canola	cytosol	77.72	75.34
CDX78432	Canola	cytosol	77.54	75.17
Bra006107.1-P	Field mustard	cytosol	77.54	75.17
TraesCS3A01G108900.1	Wheat	golgi	84.04	73.92
TraesCS3A01G275600.2	Wheat	cytosol, peroxisome, plastid	72.63	72.89
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	52.81	69.68
CDY02046	Canola	mitochondrion	62.98	64.22
TraesCS2A01G237000.1	Wheat	mitochondrion	43.33	39.65

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072
ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF37	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735
SUPFAM:SSF53223	EnsemblPlantsGene:TraesCS1A01G122500	EnsemblPlants:TraesCS1A01G122500.1	TIGR:cd05312	SEG:seg	:

Description

No Description!

Coordinates

chr1A:-:138225759..138228845

Molecular Weight (calculated)

63128.6 Da

IEP (calculated)

5.635

GRAVY (calculated)

-0.170

Length

570 amino acids

Sequence
(BLAST)

001: MAGGGVEDVY GEDRATEEQL ITPWSFSVAS GHQLLRDPRH NKGLAFTEAE RDAHYIRGLL PPAIVSQEHQ EKKIMHNLRS YTVPLHRYVA MMDLQERNER
101: LFYKLLIDNV EELLPVVYTP VVGEACQKYG SIYRRPQGLY ISLKDKGKVL EVLKNWPERS IQVIVVTDGE RILGLGDLGC QGMGIPVGKL SLYTALGGVR
201: PSACLPITID VGTNNETLLN DEYYIGLRQR RATGEEYHEL LQEFMNAVKQ NYGEKVLVQF EDFANHNAFD LLAKYSKSHL VFNDDIQGTA SVVLAGLLAA
301: LKMIGGGLVD QTYLFLGAGE AGTGIAELIA LEMSKHTELP VDDCRKKIWL VDSKGLLVES RKESLQHFKK PFAHEHEELK TLLEAVQSIK PTVLIGTSGV
401: GKTFTQEVIE AMASFNEKPV IFSLSNPTSH SECTAEEAYT WSKGTAVFAS GSPFDPVEYE GKTYVPGQSN NAYVFPGFGL GVVISGAIRV HDDMLLAASE
501: ALAEEATQEN FDKGLIFPPF TNIRKISASI AAKVAAKAYD LGLASRLPRP DDLFKYAESC MYTPLYRSYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.