Factsheet for VIT_04s0008g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT5G11670.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	85.3	84.43
VIT_11s0016g03210.t01	Wine grape	cytosol	85.13	84.26
PGSC0003DMT400077452	Potato	cytosol	85.13	84.26
Os05t0186300-01	Rice	cytosol, plasma membrane	82.05	84.21
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	61.54	83.33
Zm00001d037693_P003	Maize	extracellular	80.34	82.46
TraesCS1B01G141700.1	Wheat	cytosol	80.34	82.46
TraesCS1A01G122500.1	Wheat	cytosol	80.17	82.28
KRH52781	Soybean	mitochondrion	87.01	82.23
KRH62099	Soybean	mitochondrion	86.84	81.67
CDX91199	Canola	cytosol	81.54	81.12
CDX88203	Canola	cytosol	81.54	81.12
Bra009866.1-P	Field mustard	cytosol	81.54	81.12
EES19164	Sorghum	cytosol, peroxisome, plastid	78.97	81.05
CDY61446	Canola	cytosol	81.37	80.95
Bra023336.1-P	Field mustard	cytosol	81.37	80.95
AT5G25880.1	Thale cress	cytosol	81.2	80.78
CDX80544	Canola	cytosol	81.2	80.78
Zm00001d010358_P001	Maize	cytosol	78.63	80.7
AT5G11670.1	Thale cress	cytosol	81.03	80.61
Bra006107.1-P	Field mustard	cytosol	80.85	80.44
CDX78432	Canola	cytosol	80.85	80.44
TraesCS3B01G128000.1	Wheat	cytosol	81.03	80.2
CDX70409	Canola	cytosol	80.51	80.1
TraesCS1D01G123400.2	Wheat	mitochondrion	76.92	78.53
VIT_09s0002g03620.t01	Wine grape	cytosol	85.3	77.97
Os01t0188400-01	Rice	plastid	81.54	74.65
HORVU1Hr1G028030.16	Barley	mitochondrion	78.29	74.59
TraesCS3D01G110700.1	Wheat	plastid	81.03	73.83
Zm00001d037961_P004	Maize	plastid	80.51	73.14
TraesCS3A01G108900.1	Wheat	golgi	80.85	72.99
Zm00001d037962_P003	Maize	plastid	80.17	72.83
KXG21798	Sorghum	plastid	80.34	72.09
Zm00001d000316_P001	Maize	plastid	72.31	70.15
EES00150	Sorghum	plastid	74.87	68.87
Os02t0665000-01	Rice	cytosol	21.54	67.74
CDY02046	Canola	mitochondrion	64.44	67.44
Zm00001d036873_P001	Maize	cytosol	5.64	66.0
HORVU3Hr1G019790.9	Barley	plastid	80.34	64.47
VIT_16s0039g00580.t01	Wine grape	cytosol	5.47	62.75
Zm00001d034292_P001	Maize	cytosol	28.55	60.95
OQU86165	Sorghum	mitochondrion	68.72	56.86
VIT_00s0342g00030.t01	Wine grape	cytosol	5.98	56.45
VIT_16s0039g01050.t01	Wine grape	cytosol	5.98	55.56
VIT_00s0183g00140.t01	Wine grape	cytosol	7.18	53.85
VIT_00s0279g00080.t01	Wine grape	cytosol	12.99	53.15
VIT_16s0115g00440.t01	Wine grape	cytosol	12.82	52.45
VIT_03s0038g00040.t01	Wine grape	extracellular	6.32	51.39
VIT_16s0039g00360.t01	Wine grape	extracellular	6.15	50.0
VIT_15s0045g00190.t01	Wine grape	extracellular	5.98	48.61
HORVU5Hr1G018620.1	Barley	cytosol	8.72	43.97
VIT_15s0046g03670.t01	Wine grape	mitochondrion	40.68	39.34
VIT_15s0021g00500.t01	Wine grape	mitochondrion	41.2	38.56
HORVU3Hr1G102340.13	Barley	plastid	11.28	27.5
Zm00001d003090_P001	Maize	mitochondrion	14.87	25.51
Zm00001d051182_P001	Maize	cytosol	7.01	18.55

Protein Annotations

EntrezGene:100249166	wikigene:100249166	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	ProteinID:CCB46515
ProteinID:CCB46515.1	UniProt:F6H359	EMBL:FN595231	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0004473	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006090	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	EntrezGene:LOC100249166	wikigene:LOC100249166	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom
InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949
PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF39	SMART:SM00919
SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI00021089D7	ArrayExpress:VIT_04s0008g00180	EnsemblPlantsGene:VIT_04s0008g00180
EnsemblPlants:VIT_04s0008g00180.t01	RefSeq:XP_003631773	RefSeq:XP_003631773.1	SEG:seg	:	:

Description

Malic enzyme [Source:UniProtKB/TrEMBL;Acc:F6H359]

Coordinates

chr4:+:105842..111393

Molecular Weight (calculated)

64616.0 Da

IEP (calculated)

7.222

GRAVY (calculated)

-0.149

Length

585 amino acids

Sequence
(BLAST)

001: MASNGVSGLD MEKKSGGGGG VEDIYGEDSA TEDQLVTPWT VSVASGYTLL RDPHHNKGLA FTENERDAHY LRGLLPPAVL NQDLQEKRLM HNLRQYKVPL
101: QRYMAMMDLQ ERNERLFYKL LIDNVEELLP VVYTPTVGEA CQKYGSIFRR PQGLYISLKE KGKILEVLKN WPERSIQVIV VTDGERILGL GDLGCQGMGI
201: PVGKLSLYTA LGGLRPSACL PVTIDVGTNN EQLLKDEFYI GLKQRRATGQ EYAELLHEFM CAVKQNYGER VLIQFEDFAN HNAFELLAKY SKTHLVFNDD
301: IQGTASVVLA GLIASLKLVG GSLAEHTFLF LGAGEAGTGI AELIALEISK QTKAPLEETR KKIWLVDSKG LIVHSRMESL QHFKKPWAHD HEPIRALLDA
401: VKSIKPTVLI GSSGVGKTFT KEVVEAMTSF NKKPLILALS NPTSQSECTA EEAYTWSKGR AIFASGSPFD PVEYNGKLFV PGQANNAYIF PGFGLGLIMS
501: GAIRVHDDML LAASEALAAQ VTQENYDKGL IYPPFCNIRK ISAHIAANVA AKAYQLGLAS RLPRPEHLVK YAESCMYSPV YRSYR

Best Arabidopsis Sequence Match ( AT5G25880.1 )
(BLAST)

001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG LASNLPRPKD LVKMAESCMY SPVYRNFR

Arabidopsis Description

NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.