Factsheet for Zm00001d036873_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT5G11670.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT5G11670.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT5G11670.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003090_P001	Maize	mitochondrion	98.0	14.37
PGSC0003DMT400008389	Potato	mitochondrion	50.0	9.43
Zm00001d012764_P001	Maize	cytosol	82.0	8.25
Zm00001d010358_P001	Maize	cytosol	72.0	6.32
Zm00001d037693_P003	Maize	extracellular	70.0	6.14
Bra006107.1-P	Field mustard	cytosol	72.0	6.12
Bra023336.1-P	Field mustard	cytosol	72.0	6.12
CDX70409	Canola	cytosol	72.0	6.12
CDX78432	Canola	cytosol	72.0	6.12
CDX91199	Canola	cytosol	72.0	6.12
CDY61446	Canola	cytosol	72.0	6.12
AT5G11670.1	Thale cress	cytosol	70.0	5.95
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	70.0	5.92
KRH62099	Soybean	mitochondrion	72.0	5.79
AT5G25880.1	Thale cress	cytosol	68.0	5.78
CDX88203	Canola	cytosol	68.0	5.78
CDX80544	Canola	cytosol	68.0	5.78
Bra009866.1-P	Field mustard	cytosol	68.0	5.78
KRH52781	Soybean	mitochondrion	70.0	5.65
VIT_04s0008g00180.t01	Wine grape	cytosol	66.0	5.64
Zm00001d000316_P001	Maize	plastid	68.0	5.64
CDY02046	Canola	mitochondrion	62.0	5.55
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	46.0	5.32
Zm00001d037961_P004	Maize	plastid	68.0	5.28
Zm00001d037962_P003	Maize	plastid	68.0	5.28
Zm00001d043601_P003	Maize	mitochondrion	68.0	5.12
Zm00001d034292_P001	Maize	cytosol	18.0	3.28
Zm00001d021546_P003	Maize	mitochondrion	34.0	2.75
Zm00001d013911_P001	Maize	mitochondrion	34.0	2.66
Zm00001d042392_P001	Maize	plastid	6.0	1.16
Zm00001d051182_P001	Maize	cytosol	4.0	0.9

Protein Annotations

Gene3D:3.40.50.10380	MapMan:35.1	UniProt:A0A1D6LS73	ProteinID:AQK82301.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	InterPro:IPR037062
InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	PFAM:PF00390	PRINTS:PR00072	PANTHER:PTHR23406
PANTHER:PTHR23406:SF36	SUPFAM:SSF53223	UniParc:UPI000844C5D2	EnsemblPlantsGene:Zm00001d036873	EnsemblPlants:Zm00001d036873_P001	EnsemblPlants:Zm00001d036873_T001

Description

Malic enzyme

Coordinates

chr6:+:105374546..105374877

Molecular Weight (calculated)

5784.8 Da

IEP (calculated)

6.220

GRAVY (calculated)

-0.232

Length

50 amino acids

Sequence
(BLAST)

1: MAAVRQNYGQ KVLVQFEDFA NHNAFTLLEK YMTNHLVFND DIHVIKSDAS

Best Arabidopsis Sequence Match ( AT5G11670.1 )
(BLAST)

001: MGSTPTDLPG EDVADNRSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYLTGLLPP VILSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI FRKPQGLYIS LNEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNDE FYIGLKQRRA TGQEYAEFLH EFMCAVKQNY GEKVLVQFED FANHNAFDLL SKYSDSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKKLADHT FLFLGAGEAG TGIAELIALK ISKETGAPIT ETRKKIWLVD SKGLIVSSRK ESLQHFKQPW AHEHKPVKDL
401: IGAVNAIKPT VLIGTSGVGQ TFTKEVVEAM ATNNEKPLIL ALSNPTSQAE CTAEQAYTWT KGRAIFGSGS PFDPVVYDGK TYLPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL AAQVTEEHYA NGLIYPPFSN IREISANIAA CVAAKTYDLG LASNLPRAKD LVKFAESSMY SPVYRNYR

Arabidopsis Description

NADP-ME2NADP-dependent malic enzyme 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.