Factsheet for Zm00001d010358_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT5G11670.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT5G11670.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT5G11670.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037693_P003	Maize	extracellular	95.09	95.09
EES19164	Sorghum	cytosol, peroxisome, plastid	94.91	94.91
Os05t0186300-01	Rice	cytosol, plasma membrane	88.42	88.42
TraesCS1B01G141700.1	Wheat	cytosol	85.44	85.44
TraesCS1A01G122500.1	Wheat	cytosol	85.09	85.09
TraesCS1D01G123400.2	Wheat	mitochondrion	81.75	81.33
VIT_04s0008g00180.t01	Wine grape	cytosol	80.7	78.63
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	80.35	77.5
HORVU1Hr1G028030.16	Barley	mitochondrion	82.81	76.87
CDX91199	Canola	cytosol	79.3	76.87
Zm00001d012764_P001	Maize	cytosol	67.02	76.86
CDY61446	Canola	cytosol	79.12	76.7
CDX88203	Canola	cytosol	79.12	76.7
Bra023336.1-P	Field mustard	cytosol	79.12	76.7
Bra009866.1-P	Field mustard	cytosol	79.12	76.7
CDX80544	Canola	cytosol	78.95	76.53
AT5G11670.1	Thale cress	cytosol	78.77	76.36
KRH52781	Soybean	mitochondrion	82.46	75.93
AT5G25880.1	Thale cress	cytosol	78.07	75.68
CDX78432	Canola	cytosol	78.07	75.68
CDX70409	Canola	cytosol	78.07	75.68
Bra006107.1-P	Field mustard	cytosol	78.07	75.68
KRH62099	Soybean	mitochondrion	82.46	75.56
Zm00001d037961_P004	Maize	plastid	82.46	72.98
Zm00001d037962_P003	Maize	plastid	82.28	72.83
Zm00001d036873_P001	Maize	cytosol	6.32	72.0
Zm00001d000316_P001	Maize	plastid	74.21	70.15
Zm00001d043601_P003	Maize	mitochondrion	81.23	69.73
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	52.63	69.44
CDY02046	Canola	mitochondrion	62.28	63.51
Zm00001d034292_P001	Maize	cytosol	29.47	61.31
Zm00001d021546_P003	Maize	mitochondrion	41.93	38.61
Zm00001d013911_P001	Maize	mitochondrion	40.35	35.94
Zm00001d042392_P001	Maize	plastid	14.39	31.78
Zm00001d003090_P001	Maize	mitochondrion	16.14	26.98
Zm00001d051182_P001	Maize	cytosol	7.72	19.91

Protein Annotations

EntrezGene:103635691	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	UniProt:A0A1D6FQN8	ProteinID:AQK93932.1
ProteinID:AQK93935.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072
ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF37	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735
SUPFAM:SSF53223	UniParc:UPI0001CA954F	EnsemblPlantsGene:Zm00001d010358	EnsemblPlants:Zm00001d010358_P001	EnsemblPlants:Zm00001d010358_T001	SEG:seg

Description

Malic enzyme

Coordinates

chr8:-:110966311..110969781

Molecular Weight (calculated)

62707.2 Da

IEP (calculated)

5.949

GRAVY (calculated)

-0.154

Length

570 amino acids

Sequence
(BLAST)

001: MEGGGVGDAY GEDRATEEQL ITPWAFSVAS GYTLLRDPRH NKGLAFSEAE RDAHYLRGLL PPALASQELQ EKKLMHNLRQ YERPLHRYIA MMDLQERNER
101: LFYKLLIDNV EELLPVVYTP TVGEACQKYG SIYRRPQGLY ISLKDKGKIL EVLKNWPERS IQVIVVTDGE RILGLGDLGC QGMGIPVGKL SLYTALGGVR
201: PSACLPITID VGTNNEALLN DDFYIGLRQR RATGEEYHEL VEEFMAAVKQ NYGEKVLTQF EDFANHNAFD LLEKYRESHL VFNDDIQGTA SVVLAGLLAA
301: LKVVGGTLAD HTYLFLGAGE AGTGIAELIA LEMSKHTGSP IEECRPKIWL MDSRGLIVAS RKESLQAFKK PWAHEHGAVE TLLEAVRSLK PTVLIGTSGK
401: GGTFTKDVVE AMASQNERPV VFALSNPTSH SECTAEQAYT WTEGRAVFAS GSPFPAVELD GRALVPGQSN NAYIFPGFGL GVVISGAIRV RDDMLLAASE
501: ALAEQVTEAH YAKGLIFPPF TNIRAISARI AAKVAAKAYE LGLASRLPRP DDLVKYAESC MYTPTYRSYR

Best Arabidopsis Sequence Match ( AT5G25880.1 )
(BLAST)

001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG LASNLPRPKD LVKMAESCMY SPVYRNFR

Arabidopsis Description

NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.