Factsheet for VIT_15s0046g03670.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0052g00890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00570.1	VIT_11s0052g00890.t01	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48207	Soybean	mitochondrion	85.45	85.6
KRH65116	Soybean	mitochondrion	84.96	85.1
Solyc01g094200.2.1	Tomato	plastid	83.97	84.53
Bra037347.1-P	Field mustard	mitochondrion	81.82	84.33
CDY68746	Canola	mitochondrion	84.13	84.13
CDY51151	Canola	mitochondrion	84.3	84.02
CDX74340	Canola	mitochondrion	84.3	83.88
CDY07209	Canola	mitochondrion	84.3	83.74
KRH00689	Soybean	mitochondrion	82.48	83.17
KRH40505	Soybean	mitochondrion	81.82	82.36
Bra000967.1-P	Field mustard	mitochondrion	84.13	82.1
GSMUA_Achr1P00210_001	Banana	mitochondrion	81.32	81.46
AT4G00570.1	Thale cress	mitochondrion	81.65	81.38
PGSC0003DMT400000066	Potato	mitochondrion	83.97	81.02
KXG38219	Sorghum	mitochondrion	78.84	77.18
TraesCS1D01G164800.4	Wheat	mitochondrion, unclear	78.18	76.66
Os10t0503500-01	Rice	mitochondrion	77.36	75.48
TraesCS1B01G190400.5	Wheat	mitochondrion	76.2	75.08
Zm00001d013911_P001	Maize	mitochondrion	74.71	70.62
HORVU1Hr1G045720.1	Barley	plastid	78.02	64.92
VIT_15s0021g00500.t01	Wine grape	mitochondrion	66.12	64.0
VIT_04s0008g00180.t01	Wine grape	cytosol	39.34	40.68
VIT_11s0016g03210.t01	Wine grape	cytosol	39.17	40.1
VIT_09s0002g03620.t01	Wine grape	cytosol	39.34	37.19
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	24.79	34.72
VIT_00s0183g00140.t01	Wine grape	cytosol	3.97	30.77
VIT_16s0039g00580.t01	Wine grape	cytosol	2.48	29.41
VIT_00s0342g00030.t01	Wine grape	cytosol	2.81	27.42
VIT_16s0039g01050.t01	Wine grape	cytosol	2.81	26.98
VIT_00s0279g00080.t01	Wine grape	cytosol	6.12	25.87
VIT_16s0115g00440.t01	Wine grape	cytosol	5.95	25.17
VIT_03s0038g00040.t01	Wine grape	extracellular	2.64	22.22
VIT_16s0039g00360.t01	Wine grape	extracellular	2.64	22.22
VIT_15s0045g00190.t01	Wine grape	extracellular	2.31	19.44

Protein Annotations

EntrezGene:100241371	wikigene:100241371	MapMan:2.3.9	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	ProteinID:CBI40291
ProteinID:CBI40291.3	ncoils:Coil	UniProt:D7UC26	EMBL:FN596755	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006090	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	EntrezGene:LOC100241371
wikigene:LOC100241371	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331
PANTHER:PTHR23406	PANTHER:PTHR23406:SF32	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223
TIGR:TC66443	UniParc:UPI00015CA4DC	ArrayExpress:VIT_15s0046g03670	EnsemblPlantsGene:VIT_15s0046g03670	EnsemblPlants:VIT_15s0046g03670.t01	unigene:Vvi.14507
RefSeq:XP_002266697	RefSeq:XP_002266697.1	SEG:seg	:	:	:

Description

Malic enzyme [Source:UniProtKB/TrEMBL;Acc:D7UC26]

Coordinates

chr15:-:20165465..20179211

Molecular Weight (calculated)

66699.6 Da

IEP (calculated)

7.428

GRAVY (calculated)

-0.122

Length

605 amino acids

Sequence
(BLAST)

001: MWRNIARSAA ASSLRRSRRF STAIPGPCIV HKRGADILHD PWFNKDTGFP LTERDRLGLR GLLPPRVISF EHQYARFMES YRSLEKNTLG QPDSVVSLAK
101: WRILNRLHDR NETLYYRVLI DNIKDFAPII YTPTVGLVCQ NYSGLFRRPR GMYFSGKDKG EMMSMIYNWP AHQVDMIVIT DGSRILGLGD LGVQGIGIPI
201: GKLDMYVAAA GINPQRILPI MLDVGTNNQR LLEDRLYLGL RQPRLEGEEY LSVVDELMEA IFTRWPKAIV QFEDFQMKWA FETLQRYRKK FCMFNDDIQG
301: TAGVALAGLL GTVRAQGRPL TDFVNQKIVV VGAGSAGIGV LNMAAQAASR IAGNTGASPN HQFYLLDKDG LITKERKNID PAAAPFAKGP GEIEGLREGA
401: SLLEVVKKVK PHVLLGLSGV GGVFNEEVLK AMRESDSTKP AIFAMSNPTM NAECTAADAF KHAGENIVFA SGSPFANVNL GNGKVGHVNQ ANNMYLFPGI
501: GLGTLLAGAH FISDGMLQAA AECLASYMSD EETQNGILYP SIDSIRHITA EVGAAVLRAA VAEELAEGHG DVGPRELEHM SKEETVEYII RNMWFPIYSP
601: LVHEK

Best Arabidopsis Sequence Match ( AT4G00570.1 )
(BLAST)

001: MMWKNIAGLS KAAAAARTHG SRRCFSTAIP GPCIVHKRGA DILHDPWFNK DTGFPLTERD RLGIRGLLPP RVMTCVQQCD RFIESFRSLE NNTKGEPENV
101: VALAKWRMLN RLHDRNETLY YRVLIDNIKD FAPIIYTPTV GLVCQNYSGL YRRPRGMYFS AKDKGEMMSM IYNWPAPQVD MIVITDGSRI LGLGDLGVQG
201: IGIPIGKLDM YVAAAGINPQ RVLPIMLDVG TNNEKLLQND LYLGVRQPRL EGEEYLEIID EFMEAAFTRW PKAVVQFEDF QAKWAFGTLE RYRKKFCMFN
301: DDVQGTAGVA LAGLLGTVRA QGRPISDFVN QKIVVVGAGS AGLGVTKMAV QAVARMAGIS ESEATKNFYL IDKDGLVTTE RTKLDPGAVL FAKNPAEIRE
401: GASIVEVVKK VRPHVLLGLS GVGGIFNEEV LKAMRESDSC KPAIFAMSNP TLNAECTAAD AFKHAGGNIV FASGSPFENV ELENGKVGHV NQANNMYLFP
501: GIGLGTLLSG ARIVTDGMLQ AASECLASYM TDEEVQKGIL YPSINNIRHI TAEVGAAVLR AAVTDDIAEG HGDVGPKDLS HMSKEDTVNY ITRNMWFPVY
601: SPLVHEK

Arabidopsis Description

NAD-ME2NAD-dependent malic enzyme 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7K9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.