Factsheet for VIT_11s0052g00890.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00140.t01
VIT_11s0052g00890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18876.1	VIT_00s0199g00140.t01	AT1G78300.1	21798944
AT2G18876.1	VIT_11s0052g00890.t01	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02865	Soybean	cytosol	86.91	87.83
KRH19028	Soybean	cytosol	86.39	87.3
Solyc07g019530.2.1	Tomato	cytosol	84.03	82.73
GSMUA_Achr7P05020_001	Banana	cytosol	80.1	81.17
Bra006821.1-P	Field mustard	cytosol	76.96	80.99
CDX88621	Canola	cytosol	78.27	80.59
CDY11870	Canola	cytosol	78.01	80.32
GSMUA_Achr4P20560_001	Banana	cytosol	80.63	79.79
CDY52581	Canola	nucleus	73.3	76.5
AT5G57410.3	Thale cress	cytosol	77.49	75.7
Zm00001d050216_P003	Maize	plastid	76.96	75.58
KXG24799	Sorghum	mitochondrion, plastid	76.96	75.58
TraesCS7A01G292000.1	Wheat	cytosol, nucleus, plastid	75.39	74.81
Os08t0242900-01	Rice	nucleus	77.75	74.62
AT2G18876.1	Thale cress	cytosol	74.35	74.35
HORVU7Hr1G060360.1	Barley	plastid	65.18	73.89
TraesCS7D01G288000.2	Wheat	cytosol, nucleus, plastid	75.13	73.21
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	74.87	72.77
CDY30300	Canola	nucleus	73.82	72.68
Bra038553.1-P	Field mustard	nucleus	73.3	71.79
KRH13062	Soybean	cytosol	22.25	68.55
KRH38497	Soybean	cytosol	14.14	65.85
Bra020441.1-P	Field mustard	cytosol	15.45	62.11
CDY52582	Canola	nucleus	11.26	60.56
HORVU7Hr1G060410.1	Barley	cytosol	9.69	56.92
CDY61500	Canola	cytosol	15.71	41.1

Protein Annotations

ArrayExpress:VIT_11s0052g00890	EMBL:FN594964	EnsemblPlants:VIT_11s0052g00890.t01	EnsemblPlantsGene:VIT_11s0052g00890	EntrezGene:100263238	EntrezGene:LOC100263238
InterPro:Afadin/alpha-actinin-bd	ncoils:Coil	PANTHER:PTHR21736	PANTHER:PTHR21736:SF12	PFAM:PF11559	ProteinID:CBI17837
ProteinID:CBI17837.3	RefSeq:XP_002270836	RefSeq:XP_002270836.1	RefSeq:XP_010656838.1	unigene:Vvi.9179	UniParc:UPI0001BE1776
UniProt:D7SQA6	wikigene:100263238	wikigene:LOC100263238	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr11:+:18496266..18519550

Molecular Weight (calculated)

43672.9 Da

IEP (calculated)

5.641

GRAVY (calculated)

-0.692

Length

382 amino acids

Sequence
(BLAST)

001: MPATDTDFDL RSSSQSAFGI GECAFADAGN LEHCAKYLNQ TLVTFGFPAS LDLFAGDPVS IARTCNCIYS LLQQRQRDVE FRESANEQRQ RLLSDISRLE
101: AKVERLESQL QAKDREIATM TRTEAKATAA FKAQIEKLQQ ERDEFQRMVI GNQQVRTQQI HEMKKKEKEY IKLQERLNQV LMEKKKESRS GMEIMNLLQK
201: EGRQRGTWNG KKTDNDFYKK IVDAYEAKNQ ELMAENTDLR ALLRSMQVDM RDFLNAPNGL SKQSLVVNER FDTDASQSPL GGRTDVFDLP FHMARDQIEE
301: SLRNKMTSIK ERMVQLQDAQ KGAEVTSEAT ERELELEAQL VEARSIIQEQ ASIMSKHLAK SERPRESIIS SPAETFVVIQ GV

Best Arabidopsis Sequence Match ( AT5G57410.1 )
(BLAST)

001: MPANDAEYDL KVLSQSASAG DYTFANEDNL EHCTKYLNQT MVTFGFPASL DLFSNDPVSI SRTCNCMYSL LQQRQRDIEF RESANELRQR QQSDIARLEA
101: KVERLEALLQ QKDREIATIT RTEAKNTAAL KSQIEKLQQE RDEFQRMVIG NQQVKAQQIH EMKKKEKDYI KLQERLNQVL MEKKKESRSG MEIMNLLQKE
201: GRQRGTWNGK KTDTDFYKKI VDAYEAKNQE LMAENTSLRA LLRSMQTDMR DFLNAPNGSA TLAGSEKREA DPSQSPLGGK TDVFDLPYRM ARGQIEESLR
301: TKMASIKESM VQLQDAPKRA SVTSEATERE LELEAQLVEA RSIIQEQESI MSKHLPKSEQ RRESVASLAA EGV

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KAN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.