CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG24799

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18876.1	KXG24799	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050216_P003	Maize	plastid	97.69	97.69
TraesCS7D01G288000.2	Wheat	cytosol, nucleus, plastid	87.92	87.24
HORVU7Hr1G060360.1	Barley	plastid	75.58	87.24
Os08t0242900-01	Rice	nucleus	88.95	86.93
TraesCS7A01G292000.1	Wheat	cytosol, nucleus, plastid	85.86	86.75
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	87.4	86.51
GSMUA_Achr7P05020_001	Banana	cytosol	78.92	81.43
GSMUA_Achr4P20560_001	Banana	cytosol	79.18	79.79
VIT_11s0052g00890.t01	Wine grape	cytosol	75.58	76.96
KRH02865	Soybean	cytosol	74.55	76.72
KRH19028	Soybean	cytosol	74.29	76.45
Bra006821.1-P	Field mustard	cytosol	71.21	76.31
Solyc07g019530.2.1	Tomato	cytosol	75.32	75.52
CDX88621	Canola	cytosol	71.98	75.47
CDY11870	Canola	cytosol	71.72	75.2
CDY52581	Canola	nucleus	67.1	71.31
AT5G57410.3	Thale cress	cytosol	71.47	71.1
AT2G18876.1	Thale cress	cytosol	67.35	68.59
CDY30300	Canola	nucleus	67.87	68.04
HORVU7Hr1G060410.1	Barley	cytosol	11.31	67.69
Bra038553.1-P	Field mustard	nucleus	67.61	67.44
Bra020441.1-P	Field mustard	cytosol	15.17	62.11
KRH13062	Soybean	cytosol	18.77	58.87
KRH38497	Soybean	cytosol	11.83	56.1
CDY52582	Canola	nucleus	10.03	54.93
CDY61500	Canola	cytosol	14.91	39.73

Protein Annotations

EnsemblPlants:KXG24799	EnsemblPlantsGene:SORBI_3007G087800	InterPro:Afadin/alpha-actinin-bd	ncoils:Coil	PANTHER:PTHR21736	PANTHER:PTHR21736:SF12
PFAM:PF11559	ProteinID:KXG24799	ProteinID:KXG24799.1	UniParc:UPI00081AC74B	UniProt:A0A1B6PGJ6	MapMan:35.2

Description

hypothetical protein

Coordinates

chr7:-:12013310..12018807

Molecular Weight (calculated)

44204.4 Da

IEP (calculated)

8.076

GRAVY (calculated)

-0.867

Length

389 amino acids

Sequence
(BLAST)

001: MSSSARFDLR ASSQQLQPPP SHASMSDGGA FANAGNLEHC ARYLNQTLVT FGFPASLDLF ATDPVSIART CNCIYALLQQ RQRDIEFRES TNDQRQRMQS
101: DISRLEAKIE RMDAQLAAKD RELATLTRTE AKNTAALKSQ IDKLQQERDE FQKMVIGNQQ VRTQQIHEMK KKEKEYIKLQ EKLNQVLMEK KKESSRSGME
201: IMNLLQKEGR QRGTWNGKKN DNDYYKMIVD AYEVKKQELM QENADLRALL RSMQMDMREF LNAPNGSSQP TVTANGRQES GSPQSPLGGK TDVFDLPFHM
301: ARDQIEESLR TKMTSIKARM TQLQDAQKGA EVTSEATDRE LELEAQLVEA RSIIQEQASI MSKHFTKSDK TSGRRHSGLD GEREAPAEV

Best Arabidopsis Sequence Match ( AT5G57410.3 )
(BLAST)

001: MPANDAEYDL KVLSQSASAG DYTFANEDNL EHCTKYLNQT MVTFGFPASL DLFSNDPVSI SRTCNCMYSL LQQRQRDIEF RESANELRQR QQSDIARLEA
101: KVERLEALLQ QKDREIATIT RTEAKNTAAL KSQIEKLQQE RDEFQRMVIG NQQVKAQQIH EMKKKEKDYI KLQERLNQVL MEKKKESRSG MEIMNLLQKE
201: GRQRGTWNGK KTDTDFYKKI VDAYEAKNQE LMAENTSLRA LLRSMQTDMR DFLNAPNGSA TLAGSEKREA DPSQSPLGGK TDVFDLPYRM ARGQIEESLR
301: TKMASIKESM VQLQDAPKRA SVTSEATERE LELEAQLVEA RSIIQEQESI MSKHLPKSEQ RRESVASLAA EGLDNASSHA HMKSAPSLRL Y

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KAN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.