CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88621	Canola	cytosol	99.19	99.19
AT5G57410.3	Thale cress	cytosol	90.03	85.42
KRH02865	Soybean	cytosol	80.86	79.37
KRH19028	Soybean	cytosol	80.59	79.1
VIT_11s0052g00890.t01	Wine grape	cytosol	80.32	78.01
CDY52581	Canola	nucleus	72.78	73.77
Solyc07g019530.2.1	Tomato	cytosol	77.09	73.71
GSMUA_Achr7P05020_001	Banana	cytosol	73.58	72.41
GSMUA_Achr4P20560_001	Banana	cytosol	75.2	72.28
HORVU7Hr1G060360.1	Barley	plastid	65.23	71.81
KXG24799	Sorghum	mitochondrion, plastid	75.2	71.72
TraesCS7A01G292000.1	Wheat	cytosol, nucleus, plastid	74.39	71.69
Zm00001d050216_P003	Maize	plastid	74.93	71.47
TraesCS7D01G288000.2	Wheat	cytosol, nucleus, plastid	75.2	71.17
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	74.39	70.23
CDY30300	Canola	nucleus	73.05	69.85
Os08t0242900-01	Rice	nucleus	74.12	69.1
KRH38497	Soybean	cytosol	14.56	65.85
KRH13062	Soybean	cytosol	21.29	63.71
CDY52582	Canola	nucleus	11.32	59.15
CDY61500	Canola	cytosol	21.83	55.48
HORVU7Hr1G060410.1	Barley	cytosol	9.16	52.31

Protein Annotations

EnsemblPlants:CDY11870	EnsemblPlantsGene:GSBRNA2T00060700001	InterPro:Afadin/alpha-actinin-bd	ncoils:Coil	PANTHER:PTHR21736	PANTHER:PTHR21736:SF12
PFAM:PF11559	ProteinID:CDY11870	ProteinID:CDY11870.1	SEG:seg	UniParc:UPI0001D65165	UniProt:A0A078FBU1
MapMan:35.2	:	:	:	:	:

Description

BnaC03g12960DBnaC03g12960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBU1]

Coordinates

chrLK032015:+:162468..165512

Molecular Weight (calculated)

42435.4 Da

IEP (calculated)

7.042

GRAVY (calculated)

-0.876

Length

371 amino acids

Sequence
(BLAST)

001: MPPTDAEFDP KVLPQSATGD YTFANVDNLE HCAKYLNQTM VTFGFPASLD LFSNDPVSIS RTCNCMYSLL QQRQRDLEFR ESANELRQRQ QSDIARLEAK
101: VERLDAQLQH KDREIATITR TEAKNTAALK SQIEKLQQER DEFQRMVIGN QQVKAQQIHE MKKKEKDYIK LQERLNQVLM EKKKESKSGM EIMNLLQKEG
201: RQRGTWNGKK TDTDFYKKIV DAYEAKNQEL MAENTNLRAL LRSMQTDMRD FLNAPNGSAN PSLAGNEKRE ADPSQSPLGG KTDVFDLPFR MARGQIEESL
301: RTKMASIKER MVQLQDAPKG ASVTSEATER ELELEAQLAE ARSIIQEQES IMCKHLPKSE QRKGIHGSID S

Best Arabidopsis Sequence Match ( AT5G57410.1 )
(BLAST)

001: MPANDAEYDL KVLSQSASAG DYTFANEDNL EHCTKYLNQT MVTFGFPASL DLFSNDPVSI SRTCNCMYSL LQQRQRDIEF RESANELRQR QQSDIARLEA
101: KVERLEALLQ QKDREIATIT RTEAKNTAAL KSQIEKLQQE RDEFQRMVIG NQQVKAQQIH EMKKKEKDYI KLQERLNQVL MEKKKESRSG MEIMNLLQKE
201: GRQRGTWNGK KTDTDFYKKI VDAYEAKNQE LMAENTSLRA LLRSMQTDMR DFLNAPNGSA TLAGSEKREA DPSQSPLGGK TDVFDLPYRM ARGQIEESLR
301: TKMASIKESM VQLQDAPKRA SVTSEATERE LELEAQLVEA RSIIQEQESI MSKHLPKSEQ RRESVASLAA EGV

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KAN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.