Factsheet for GSMUA_Achr4P20560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P17880_001
GSMUA_Achr4P20560_001
GSMUA_Achr7P05020_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18876.1	GSMUA_Achr3P17880_001	AT1G78300.1	21798944
AT2G18876.1	GSMUA_Achr4P20560_001	AT2G18876.1	21798944
AT2G18876.1	GSMUA_Achr7P05020_001	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05020_001	Banana	cytosol	87.31	89.39
VIT_11s0052g00890.t01	Wine grape	cytosol	79.79	80.63
HORVU7Hr1G060360.1	Barley	plastid	70.21	80.42
TraesCS7A01G292000.1	Wheat	cytosol, nucleus, plastid	80.05	80.26
KXG24799	Sorghum	mitochondrion, plastid	79.79	79.18
Zm00001d050216_P003	Maize	plastid	79.53	78.92
Os08t0242900-01	Rice	nucleus	81.35	78.89
KRH02865	Soybean	cytosol	77.2	78.84
TraesCS7D01G288000.2	Wheat	cytosol, nucleus, plastid	80.05	78.83
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	79.79	78.37
KRH19028	Soybean	cytosol	76.42	78.04
Solyc07g019530.2.1	Tomato	cytosol	76.68	76.29
Bra006821.1-P	Field mustard	cytosol	71.5	76.03
CDX88621	Canola	cytosol	72.54	75.47
CDY11870	Canola	cytosol	72.28	75.2
CDY52581	Canola	nucleus	68.65	72.4
AT5G57410.3	Thale cress	cytosol	73.06	72.12
AT2G18876.1	Thale cress	cytosol	69.17	69.9
CDY30300	Canola	nucleus	68.39	68.04
Bra038553.1-P	Field mustard	nucleus	68.39	67.69
KRH38497	Soybean	cytosol	13.73	64.63
Bra020441.1-P	Field mustard	cytosol	15.29	62.11
KRH13062	Soybean	cytosol	19.69	61.29
CDY52582	Canola	nucleus	10.36	56.34
HORVU7Hr1G060410.1	Barley	cytosol	9.33	55.38
CDY61500	Canola	cytosol	15.29	40.41

Protein Annotations

EnsemblPlants:GSMUA_Achr4P20560_001	EnsemblPlants:GSMUA_Achr4T20560_001	EnsemblPlantsGene:GSMUA_Achr4G20560_001	Gene3D:1.20.120.1490	InterPro:Afadin/alpha-actinin-bd	ncoils:Coil
PANTHER:PTHR21736	PANTHER:PTHR21736:SF12	PFAM:PF11559	UniParc:UPI000294FCA5	UniProt:M0SQL9	MapMan:35.2

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G20560_001]

Coordinates

chr4:+:21157862..21163787

Molecular Weight (calculated)

44173.5 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.765

Length

386 amino acids

Sequence
(BLAST)

001: MAGTHSEFDI GASATPPFGI REYAFADAGN LEHCSKYLNQ TLVTFGFPAS LDLFATDPVS IARTCNCIYS LLQQRQRDIE FREASNDQRQ RLQSDISRFE
101: AKVERLEAQL TAKDRELATL TRTEAKNTAN LKAQIEKLQQ ERDEFQKMVI GNQQVRTQQI HEMKKKEKEY IKLQERLNQV LMEKKKESRS GMEIMNLLQK
201: EGRQRGTWNG KKADSDFYKM IVDAYEVKKK ELMAENSDLR ALLRSMQMDM RDFLNAPNGL PQQTSAANEK EDAGSPQSPL GGRMDVFDLP FHMARDQIEE
301: SLRTKMASIK ARMSQLQDAQ KGAEVTCEAT ERELELEAQL VEARSIIQEQ ASIMSKHFAK NDKPRRLSSQ FDAEREVILS KSAEEV

Best Arabidopsis Sequence Match ( AT5G57410.3 )
(BLAST)

001: MPANDAEYDL KVLSQSASAG DYTFANEDNL EHCTKYLNQT MVTFGFPASL DLFSNDPVSI SRTCNCMYSL LQQRQRDIEF RESANELRQR QQSDIARLEA
101: KVERLEALLQ QKDREIATIT RTEAKNTAAL KSQIEKLQQE RDEFQRMVIG NQQVKAQQIH EMKKKEKDYI KLQERLNQVL MEKKKESRSG MEIMNLLQKE
201: GRQRGTWNGK KTDTDFYKKI VDAYEAKNQE LMAENTSLRA LLRSMQTDMR DFLNAPNGSA TLAGSEKREA DPSQSPLGGK TDVFDLPYRM ARGQIEESLR
301: TKMASIKESM VQLQDAPKRA SVTSEATERE LELEAQLVEA RSIIQEQESI MSKHLPKSEQ RRESVASLAA EGLDNASSHA HMKSAPSLRL Y

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KAN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.