Factsheet for Os08t0242900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0242900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18876.1	Os08t0242900-01	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G292000.1	Wheat	cytosol, nucleus, plastid	86.18	89.09
KXG24799	Sorghum	mitochondrion, plastid	86.93	88.95
HORVU7Hr1G060360.1	Barley	plastid	74.87	88.43
TraesCS7D01G288000.2	Wheat	cytosol, nucleus, plastid	86.93	88.27
Zm00001d050216_P003	Maize	plastid	85.93	87.92
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	86.18	87.28
GSMUA_Achr7P05020_001	Banana	cytosol	77.14	81.43
GSMUA_Achr4P20560_001	Banana	cytosol	78.89	81.35
VIT_11s0052g00890.t01	Wine grape	cytosol	74.62	77.75
KRH02865	Soybean	cytosol	73.12	76.98
KRH19028	Soybean	cytosol	72.86	76.72
Bra006821.1-P	Field mustard	cytosol	69.1	75.76
Solyc07g019530.2.1	Tomato	cytosol	73.37	75.26
CDX88621	Canola	cytosol	69.35	74.39
CDY11870	Canola	cytosol	69.1	74.12
CDY52581	Canola	nucleus	65.83	71.58
AT5G57410.3	Thale cress	cytosol	69.6	70.84
AT2G18876.1	Thale cress	cytosol	66.33	69.11
CDY30300	Canola	nucleus	65.83	67.53
Bra038553.1-P	Field mustard	nucleus	65.83	67.18
HORVU7Hr1G060410.1	Barley	cytosol	10.8	66.15
Bra020441.1-P	Field mustard	cytosol	15.58	65.26
KRH38497	Soybean	cytosol	12.56	60.98
KRH13062	Soybean	cytosol	18.84	60.48
CDY52582	Canola	nucleus	10.05	56.34
CDY61500	Canola	cytosol	15.33	41.78

Protein Annotations

EnsemblPlants:Os08t0242900-01	EnsemblPlantsGene:Os08g0242900	EntrezGene:4345045	InterPro:Afadin/alpha-actinin-bd	ncoils:Coil	PANTHER:PTHR21736
PANTHER:PTHR21736:SF12	PFAM:PF11559	ProteinID:BAD05632.1	ProteinID:BAF23258.1	ProteinID:BAT04509.1	RefSeq:XP_015650732.1
SEG:seg	UniParc:UPI000022F2B6	UniProt:Q6Z0V1	MapMan:35.2	:	:

Description

Afadin/alpha-actinin-binding domain containing protein. (Os08t0242900-01)

Coordinates

chr8:-:8681628..8686438

Molecular Weight (calculated)

44598.1 Da

IEP (calculated)

7.632

GRAVY (calculated)

-0.734

Length

398 amino acids

Sequence
(BLAST)

001: MSASSRFDLR ASSHPHQHAI GGGGGGGGMS DGGGGAAAAF ADAGNLEHCA RYLNQTLVTF GFPASLDLFA TDPVSIARTC NCIYALLQQR QRDIEFREST
101: NDLRQRMQSD ISRLEAKIER MDAQLAAKDR ELATLTRTEA KNTATLKAQI DKLQQERDEF QKMVIGNQQV RTQQIHEMKK KEKEYIKLQE KLNQVLMEKK
201: KESSRSGMEI MNLLQKEGRQ RGTWSGKKND NDYYKMIVDA YEVKKQELMQ ENADLRALLR SMQMDMREFL NAPNGVPQPA VVGNGRQEAG SPQSPLGGKT
301: DVFDLPFHMA RDQIEESLRT KMASIKARMT QLQDAQKGAE VTSEATEREL ELEAQLVEAR SIIQEQASLM SKHFTKSDKP RRLSGLDAER EAVAAQEV

Best Arabidopsis Sequence Match ( AT5G57410.1 )
(BLAST)

001: MPANDAEYDL KVLSQSASAG DYTFANEDNL EHCTKYLNQT MVTFGFPASL DLFSNDPVSI SRTCNCMYSL LQQRQRDIEF RESANELRQR QQSDIARLEA
101: KVERLEALLQ QKDREIATIT RTEAKNTAAL KSQIEKLQQE RDEFQRMVIG NQQVKAQQIH EMKKKEKDYI KLQERLNQVL MEKKKESRSG MEIMNLLQKE
201: GRQRGTWNGK KTDTDFYKKI VDAYEAKNQE LMAENTSLRA LLRSMQTDMR DFLNAPNGSA TLAGSEKREA DPSQSPLGGK TDVFDLPYRM ARGQIEESLR
301: TKMASIKESM VQLQDAPKRA SVTSEATERE LELEAQLVEA RSIIQEQESI MSKHLPKSEQ RRESVASLAA EGV

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KAN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.