Factsheet for TraesCS7A01G292000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G292000.1
TraesCS7B01G183000.7
TraesCS7D01G288000.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18876.1	TraesCS7A01G292000.1	AT2G18876.1	21798944
AT2G18876.1	TraesCS7B01G183000.7	AT2G18876.1	21798944
AT2G18876.1	TraesCS7D01G288000.2	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	97.14	95.17
HORVU7Hr1G060360.1	Barley	plastid	83.12	94.96
TraesCS7D01G288000.2	Wheat	cytosol, nucleus, plastid	95.84	94.13
Os08t0242900-01	Rice	nucleus	89.09	86.18
KXG24799	Sorghum	mitochondrion, plastid	86.75	85.86
Zm00001d050216_P003	Maize	plastid	85.97	85.09
GSMUA_Achr7P05020_001	Banana	cytosol	79.22	80.9
GSMUA_Achr4P20560_001	Banana	cytosol	80.26	80.05
Bra006821.1-P	Field mustard	cytosol	71.69	76.03
KRH02865	Soybean	cytosol	74.29	75.66
VIT_11s0052g00890.t01	Wine grape	cytosol	74.81	75.39
KRH19028	Soybean	cytosol	73.51	74.87
CDX88621	Canola	cytosol	71.95	74.66
CDY11870	Canola	cytosol	71.69	74.39
Solyc07g019530.2.1	Tomato	cytosol	74.03	73.45
CDY52581	Canola	nucleus	67.01	70.49
AT5G57410.3	Thale cress	cytosol	71.43	70.33
HORVU7Hr1G060410.1	Barley	cytosol	11.43	67.69
AT2G18876.1	Thale cress	cytosol	67.01	67.54
CDY30300	Canola	nucleus	67.01	66.49
Bra038553.1-P	Field mustard	nucleus	66.75	65.9
Bra020441.1-P	Field mustard	cytosol	16.1	65.26
KRH38497	Soybean	cytosol	12.73	59.76
KRH13062	Soybean	cytosol	19.22	59.68
CDY52582	Canola	nucleus	10.13	54.93
CDY61500	Canola	cytosol	15.84	41.78

Protein Annotations

EnsemblPlants:TraesCS7A01G292000.1	EnsemblPlantsGene:TraesCS7A01G292000	InterPro:Afadin/alpha-actinin-bd	ncoils:Coil	PANTHER:PTHR21736	PANTHER:PTHR21736:SF12
PFAM:PF11559	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr7A:+:362736340..362743003

Molecular Weight (calculated)

43637.9 Da

IEP (calculated)

7.006

GRAVY (calculated)

-0.717

Length

385 amino acids

Sequence
(BLAST)

001: MSVSSRFELR DSSLCCCCSG DVGTFADAGN LEHCAKYLNQ TLVTFGFPAS LDLFATDPVS IARTCNCMYA LLQQRQRDIE FRESTNDLRQ RMQSDISRLE
101: AKIERMDAQS AAKDRELATL TRTEAKNTAA LKAHIEKLQQ ERDEFQKMVI GNQQVRTQQI HETKKKEKEY IKLQEKLNQV LMEKKKESSR SGMEIMNLLQ
201: KEGRQRGTWT GKKNDNDYYK MIVDAYEVKK QELVQENADL RALLRSMQMD MREFLNAPTG SSQPAVAGNG RQEAGSPQSP LGGKTDVFDL PFHMARDQIE
301: ESLRTKMASV KARMTQLQDA QKGAEVTSEV TERELELEAQ LVEARSIIQE QASIMSKHFS KSDKPRRLSG LDAEREAILS ASTDV

Best Arabidopsis Sequence Match ( AT2G18876.1 )
(BLAST)

001: MSLTVPEFDF RLTPQFGFSQ SPIGERNFAD VDNLENCIKY LNQSLVTSGF SASLDLFATD PVSIARTCNC VYALIQQRQR DVEFRESAND QRQRLLSDMA
101: RLEAKVERLE TQLQAKEREL GSVTRTEAKN TAALKTQNEK LQKERDEFQR MVIANQQVKT QQLHETKKKE KEYIKLQERL NQVLMEKKKE TRSGMEIMNL
201: LQKEGRQRGT WSGKKTDSDF YKKIVDAYEA KNQELMAENT DLRALLRSTQ GDMRSFLNAS GGLTNQSLVA NGRHGADPSQ SPLGGKTDVF DLPFRMARGQ
301: IEDSLRSKMV SIKERMGQLV DAQKEVSITS EASERELELE AQLVEARSII QEQESIMSKH LPKTDRRRNS APPHSSVNGL RG

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:Q8GW47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.