Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52581 | Canola | nucleus | 88.48 | 92.35 |
| CDY30300 | Canola | nucleus | 87.7 | 86.34 |
| Bra038553.1-P | Field mustard | nucleus | 87.96 | 86.15 |
| CDY52582 | Canola | nucleus | 14.66 | 78.87 |
| KRH02865 | Soybean | cytosol | 75.39 | 76.19 |
| KRH19028 | Soybean | cytosol | 75.13 | 75.93 |
| VIT_11s0052g00890.t01 | Wine grape | cytosol | 74.35 | 74.35 |
| AT5G57410.3 | Thale cress | cytosol | 72.25 | 70.59 |
| GSMUA_Achr7P05020_001 | Banana | cytosol | 69.37 | 70.29 |
| Solyc07g019530.2.1 | Tomato | cytosol | 71.2 | 70.1 |
| GSMUA_Achr4P20560_001 | Banana | cytosol | 69.9 | 69.17 |
| HORVU7Hr1G060360.1 | Barley | plastid | 60.21 | 68.25 |
| KXG24799 | Sorghum | mitochondrion, plastid | 68.59 | 67.35 |
| TraesCS7D01G288000.2 | Wheat | cytosol, nucleus, plastid | 68.85 | 67.09 |
| TraesCS7A01G292000.1 | Wheat | cytosol, nucleus, plastid | 67.54 | 67.01 |
| Zm00001d050216_P003 | Maize | plastid | 68.06 | 66.84 |
| Os08t0242900-01 | Rice | nucleus | 69.11 | 66.33 |
| TraesCS7B01G183000.7 | Wheat | cytosol, nucleus, plastid | 67.54 | 65.65 |
| KRH13062 | Soybean | cytosol | 19.63 | 60.48 |
| KRH38497 | Soybean | cytosol | 12.83 | 59.76 |
| HORVU7Hr1G060410.1 | Barley | cytosol | 8.9 | 52.31 |
Protein Annotations
| MapMan:35.2 | EntrezGene:816403 | ProteinID:AEC06818.1 | EMBL:AK119090 | ArrayExpress:AT2G18876 | EnsemblPlantsGene:AT2G18876 |
| RefSeq:AT2G18876 | TAIR:AT2G18876 | RefSeq:AT2G18876-TAIR-G | EnsemblPlants:AT2G18876.1 | TAIR:AT2G18876.1 | InterPro:Afadin/alpha-actinin-bd |
| Unigene:At.63475 | EMBL:BT005337 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005856 | GO:GO:0005875 | GO:GO:0008150 | RefSeq:NP_849981.1 | PFAM:PF11559 |
| PO:PO:0000293 | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF12 | UniProt:Q8GW47 | UniParc:UPI000000C5FA | SEG:seg |
Description
Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:Q8GW47]
Coordinates
chr2:+:8169572..8172523
Molecular Weight (calculated)
43511.7 Da
IEP (calculated)
9.056
GRAVY (calculated)
-0.796
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLTVPEFDF RLTPQFGFSQ SPIGERNFAD VDNLENCIKY LNQSLVTSGF SASLDLFATD PVSIARTCNC VYALIQQRQR DVEFRESAND QRQRLLSDMA
101: RLEAKVERLE TQLQAKEREL GSVTRTEAKN TAALKTQNEK LQKERDEFQR MVIANQQVKT QQLHETKKKE KEYIKLQERL NQVLMEKKKE TRSGMEIMNL
201: LQKEGRQRGT WSGKKTDSDF YKKIVDAYEA KNQELMAENT DLRALLRSTQ GDMRSFLNAS GGLTNQSLVA NGRHGADPSQ SPLGGKTDVF DLPFRMARGQ
301: IEDSLRSKMV SIKERMGQLV DAQKEVSITS EASERELELE AQLVEARSII QEQESIMSKH LPKTDRRRNS APPHSSVNGL RG
101: RLEAKVERLE TQLQAKEREL GSVTRTEAKN TAALKTQNEK LQKERDEFQR MVIANQQVKT QQLHETKKKE KEYIKLQERL NQVLMEKKKE TRSGMEIMNL
201: LQKEGRQRGT WSGKKTDSDF YKKIVDAYEA KNQELMAENT DLRALLRSTQ GDMRSFLNAS GGLTNQSLVA NGRHGADPSQ SPLGGKTDVF DLPFRMARGQ
301: IEDSLRSKMV SIKERMGQLV DAQKEVSITS EASERELELE AQLVEARSII QEQESIMSKH LPKTDRRRNS APPHSSVNGL RG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.