CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02865
KRH05108
KRH13062
KRH19028
KRH38497

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18876.1	KRH05108	AT1G78300.1	21798944
AT2G18876.1	KRH02865	AT2G18876.1	21798944
AT2G18876.1	KRH13062	AT2G18876.1	21798944
AT2G18876.1	KRH19028	AT2G18876.1	21798944
AT2G18876.1	KRH38497	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38497	Soybean	cytosol	37.9	57.32
HORVU7Hr1G060410.1	Barley	cytosol	24.19	46.15
KRH02865	Soybean	cytosol	75.81	24.87
KRH19028	Soybean	cytosol	75.0	24.6
VIT_11s0052g00890.t01	Wine grape	cytosol	68.55	22.25
Solyc07g019530.2.1	Tomato	cytosol	69.35	22.16
Bra006821.1-P	Field mustard	cytosol	62.9	21.49
CDY11870	Canola	cytosol	63.71	21.29
CDX88621	Canola	cytosol	62.9	21.02
CDY52581	Canola	nucleus	60.48	20.49
AT5G57410.3	Thale cress	cytosol	63.71	20.2
GSMUA_Achr7P05020_001	Banana	cytosol	61.29	20.16
GSMUA_Achr4P20560_001	Banana	cytosol	61.29	19.69
TraesCS7D01G288000.2	Wheat	cytosol, nucleus, plastid	62.1	19.64
AT2G18876.1	Thale cress	cytosol	60.48	19.63
CDY30300	Canola	nucleus	60.48	19.33
Bra038553.1-P	Field mustard	nucleus	60.48	19.23
TraesCS7A01G292000.1	Wheat	cytosol, nucleus, plastid	59.68	19.22
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	60.48	19.08
Zm00001d050216_P003	Maize	plastid	59.68	19.02
Os08t0242900-01	Rice	nucleus	60.48	18.84
KXG24799	Sorghum	mitochondrion, plastid	58.87	18.77
HORVU7Hr1G060360.1	Barley	plastid	39.52	14.54
Bra020441.1-P	Field mustard	cytosol	2.42	3.16
CDY61500	Canola	cytosol	2.42	2.05
CDY52582	Canola	nucleus	0.0	0.0

Protein Annotations

EMBL:ACUP02009529	EnsemblPlants:KRH13062	EnsemblPlantsGene:GLYMA_15G213500	Gene3D:1.20.5.170	ncoils:Coil	PANTHER:PTHR21736
PANTHER:PTHR21736:SF12	ProteinID:KRH13062	ProteinID:KRH13062.1	UniParc:UPI000296207D	UniProt:K7MCT7	MapMan:35.2

Description

hypothetical protein

Coordinates

chr15:-:33746522..33747916

Molecular Weight (calculated)

14353.1 Da

IEP (calculated)

4.795

GRAVY (calculated)

-0.521

Length

124 amino acids

Sequence
(BLAST)

001: MSLTNRDLDV RTFADEENLE HYAKYLNQSL ITFGFPASLD LFTNHPMRIE LIPLLSDISR LEAKVERLEG QLQVKDKDIA TITRTVDAYE SKNQELVAEN
101: DDLRALLRSM QVEIRNFRKQ PGTN

Best Arabidopsis Sequence Match ( AT5G57410.1 )
(BLAST)

001: MPANDAEYDL KVLSQSASAG DYTFANEDNL EHCTKYLNQT MVTFGFPASL DLFSNDPVSI SRTCNCMYSL LQQRQRDIEF RESANELRQR QQSDIARLEA
101: KVERLEALLQ QKDREIATIT RTEAKNTAAL KSQIEKLQQE RDEFQRMVIG NQQVKAQQIH EMKKKEKDYI KLQERLNQVL MEKKKESRSG MEIMNLLQKE
201: GRQRGTWNGK KTDTDFYKKI VDAYEAKNQE LMAENTSLRA LLRSMQTDMR DFLNAPNGSA TLAGSEKREA DPSQSPLGGK TDVFDLPYRM ARGQIEESLR
301: TKMASIKESM VQLQDAPKRA SVTSEATERE LELEAQLVEA RSIIQEQESI MSKHLPKSEQ RRESVASLAA EGV

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KAN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.