Factsheet for TraesCS7D01G288000.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G292000.1
TraesCS7B01G183000.7
TraesCS7D01G288000.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18876.1	TraesCS7A01G292000.1	AT2G18876.1	21798944
AT2G18876.1	TraesCS7B01G183000.7	AT2G18876.1	21798944
AT2G18876.1	TraesCS7D01G288000.2	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G060410.1	Barley	cytosol	16.33	98.46
TraesCS7A01G292000.1	Wheat	cytosol, nucleus, plastid	94.13	95.84
HORVU7Hr1G060360.1	Barley	plastid	82.14	95.55
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	95.66	95.42
KXG24799	Sorghum	mitochondrion, plastid	87.24	87.92
Zm00001d050216_P003	Maize	plastid	86.73	87.4
Os08t0242900-01	Rice	nucleus	88.27	86.93
GSMUA_Achr7P05020_001	Banana	cytosol	78.06	81.17
GSMUA_Achr4P20560_001	Banana	cytosol	78.83	80.05
Bra006821.1-P	Field mustard	cytosol	70.92	76.58
KRH02865	Soybean	cytosol	73.47	76.19
KRH19028	Soybean	cytosol	72.7	75.4
CDY11870	Canola	cytosol	71.17	75.2
CDX88621	Canola	cytosol	71.17	75.2
VIT_11s0052g00890.t01	Wine grape	cytosol	73.21	75.13
Solyc07g019530.2.1	Tomato	cytosol	74.23	75.0
CDY52581	Canola	nucleus	66.84	71.58
AT5G57410.3	Thale cress	cytosol	70.66	70.84
AT2G18876.1	Thale cress	cytosol	67.09	68.85
CDY30300	Canola	nucleus	66.33	67.01
Bra038553.1-P	Field mustard	nucleus	66.58	66.92
Bra020441.1-P	Field mustard	cytosol	15.82	65.26
KRH13062	Soybean	cytosol	19.64	62.1
KRH38497	Soybean	cytosol	12.76	60.98
CDY52582	Canola	nucleus	9.95	54.93
CDY61500	Canola	cytosol	15.56	41.78

Protein Annotations

EnsemblPlants:TraesCS7D01G288000.2	EnsemblPlantsGene:TraesCS7D01G288000	InterPro:Afadin/alpha-actinin-bd	ncoils:Coil	PANTHER:PTHR21736	PANTHER:PTHR21736:SF12
PFAM:PF11559	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:317410779..317430258

Molecular Weight (calculated)

44414.9 Da

IEP (calculated)

7.632

GRAVY (calculated)

-0.759

Length

392 amino acids

Sequence
(BLAST)

001: MSVSSRFELR ASSNLHQQPP PPVGMSGDVG TFADAGNLEH CAKYLNQTLV TFGFPASLDL FATDPVSIAR TCNCMYALLQ QRQRDIEFRE STNDLRQRMQ
101: SDISRLEAKI ERMDAQLAAK DRELATLTRT EAKNTAALKA HIEKLQQERD EFQKMVIGNQ QVRTQQIHET KKKEKEYIKL QEKLNQVLME KKKESSRSGM
201: EIMNLLQKEG RQRGTWTGKK NDNDYYKMIV DAYEVKKQEL VQENADLRAL LRSMQMDMRE FLNAPTGSSQ PAVAGNGRQE AGSPQSPLGG KTDVFDLPFH
301: MARDQIEESL RTKMASVKAR MTQLQDAQKG AEVTSEVTER ELELEAQLVE ARSIIQEQAS IMSKHFSKSD KPRRLSGLDA EREAIHSAST DV

Best Arabidopsis Sequence Match ( AT5G57410.3 )
(BLAST)

001: MPANDAEYDL KVLSQSASAG DYTFANEDNL EHCTKYLNQT MVTFGFPASL DLFSNDPVSI SRTCNCMYSL LQQRQRDIEF RESANELRQR QQSDIARLEA
101: KVERLEALLQ QKDREIATIT RTEAKNTAAL KSQIEKLQQE RDEFQRMVIG NQQVKAQQIH EMKKKEKDYI KLQERLNQVL MEKKKESRSG MEIMNLLQKE
201: GRQRGTWNGK KTDTDFYKKI VDAYEAKNQE LMAENTSLRA LLRSMQTDMR DFLNAPNGSA TLAGSEKREA DPSQSPLGGK TDVFDLPYRM ARGQIEESLR
301: TKMASIKESM VQLQDAPKRA SVTSEATERE LELEAQLVEA RSIIQEQESI MSKHLPKSEQ RRESVASLAA EGLDNASSHA HMKSAPSLRL Y

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KAN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.