Factsheet for Zm00001d050216_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013429_P001
Zm00001d050216_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18876.1	Zm00001d013429_P001	AT1G78300.1	21798944
AT2G18876.1	Zm00001d050216_P003	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24799	Sorghum	mitochondrion, plastid	97.69	97.69
HORVU7Hr1G060360.1	Barley	plastid	75.58	87.24
TraesCS7D01G288000.2	Wheat	cytosol, nucleus, plastid	87.4	86.73
TraesCS7A01G292000.1	Wheat	cytosol, nucleus, plastid	85.09	85.97
Os08t0242900-01	Rice	nucleus	87.92	85.93
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	86.63	85.75
GSMUA_Achr7P05020_001	Banana	cytosol	78.92	81.43
GSMUA_Achr4P20560_001	Banana	cytosol	78.92	79.53
KRH19028	Soybean	cytosol	74.81	76.98
KRH02865	Soybean	cytosol	74.81	76.98
VIT_11s0052g00890.t01	Wine grape	cytosol	75.58	76.96
Bra006821.1-P	Field mustard	cytosol	70.95	76.03
CDX88621	Canola	cytosol	71.72	75.2
Solyc07g019530.2.1	Tomato	cytosol	74.81	75.0
CDY11870	Canola	cytosol	71.47	74.93
AT5G57410.3	Thale cress	cytosol	71.47	71.1
CDY52581	Canola	nucleus	66.84	71.04
AT2G18876.1	Thale cress	cytosol	66.84	68.06
CDY30300	Canola	nucleus	67.61	67.78
HORVU7Hr1G060410.1	Barley	cytosol	11.31	67.69
Bra038553.1-P	Field mustard	nucleus	67.35	67.18
Bra020441.1-P	Field mustard	cytosol	14.91	61.05
KRH13062	Soybean	cytosol	19.02	59.68
KRH38497	Soybean	cytosol	12.08	57.32
CDY52582	Canola	nucleus	9.77	53.52
CDY61500	Canola	cytosol	14.65	39.04

Protein Annotations

EnsemblPlants:Zm00001d050216_P003	EnsemblPlants:Zm00001d050216_T003	EnsemblPlantsGene:Zm00001d050216	InterPro:Afadin/alpha-actinin-bd	ncoils:Coil	PANTHER:PTHR21736
PANTHER:PTHR21736:SF12	PFAM:PF11559	ProteinID:AQK52122.1	UniParc:UPI0001D65167	UniProt:K7UDY5	MapMan:35.2

Description

Afadin/alpha-actinin-binding protein

Coordinates

chr4:-:73974643..73980457

Molecular Weight (calculated)

44293.4 Da

IEP (calculated)

7.186

GRAVY (calculated)

-0.878

Length

389 amino acids

Sequence
(BLAST)

001: MSSSARFDLR ASSHQLQPPP SHASMSSDGG AFANAENLEH CARYLNQTLV TFGFPASLDL FATDPVSIAR TCNCIYALLQ QRQRDIEFRE STNDQRQRMQ
101: SDISRLEAKI ERMDAQLAAK DRELATLTRT EAKNTAALKS QIDKLQQERD EFQKMVIGNQ QVRTQQIHEM KKKEKEYIKL QEKLNQVLME KKKESSRSGM
201: EIMNLLQKEG RQRGTWNGKK NDNDYYKMIV DAYEVKKQEL MQENADLRAL LRSMQMDMRD FLNAPNGSSQ STVTDNGRQE SGSPQSPLGG KTDVFDLPFH
301: MARDQIEESL RTKMTSIKAR MTQLQDAQKG AEVTSEATDR ELELEAQLVE ARSIIQEQAC IMSKHFKSDK PSGRRHSGLD GEREASAEV

Best Arabidopsis Sequence Match ( AT5G57410.1 )
(BLAST)

001: MPANDAEYDL KVLSQSASAG DYTFANEDNL EHCTKYLNQT MVTFGFPASL DLFSNDPVSI SRTCNCMYSL LQQRQRDIEF RESANELRQR QQSDIARLEA
101: KVERLEALLQ QKDREIATIT RTEAKNTAAL KSQIEKLQQE RDEFQRMVIG NQQVKAQQIH EMKKKEKDYI KLQERLNQVL MEKKKESRSG MEIMNLLQKE
201: GRQRGTWNGK KTDTDFYKKI VDAYEAKNQE LMAENTSLRA LLRSMQTDMR DFLNAPNGSA TLAGSEKREA DPSQSPLGGK TDVFDLPYRM ARGQIEESLR
301: TKMASIKESM VQLQDAPKRA SVTSEATERE LELEAQLVEA RSIIQEQESI MSKHLPKSEQ RRESVASLAA EGV

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KAN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.