CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68022
CDX79255
CDX87455
CDX88436
CDX91676
CDY00447
CDY14618
CDY30300
CDY41483
CDY46646
CDY52581
CDY52582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18876.1	CDX68022	AT1G78300.1	21798944
AT2G18876.1	CDX79255	AT1G78300.1	21798944
AT2G18876.1	CDX87455	AT1G78300.1	21798944
AT2G18876.1	CDX88436	AT1G78300.1	21798944
AT2G18876.1	CDX91676	AT1G78300.1	21798944
AT2G18876.1	CDY00447	AT1G78300.1	21798944
AT2G18876.1	CDY14618	AT1G78300.1	21798944
AT2G18876.1	CDY41483	AT1G78300.1	21798944
AT2G18876.1	CDY46646	AT1G78300.1	21798944
AT2G18876.1	CDY30300	AT2G18876.1	21798944
AT2G18876.1	CDY52581	AT2G18876.1	21798944
AT2G18876.1	CDY52582	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30300	Canola	nucleus	96.17	90.72
AT2G18876.1	Thale cress	cytosol	92.35	88.48
CDY52582	Canola	nucleus	15.3	78.87
KRH02865	Soybean	cytosol	77.6	75.13
KRH19028	Soybean	cytosol	77.05	74.6
VIT_11s0052g00890.t01	Wine grape	cytosol	76.5	73.3
CDX88621	Canola	cytosol	74.04	73.05
CDY11870	Canola	cytosol	73.77	72.78
GSMUA_Achr7P05020_001	Banana	cytosol	72.13	70.03
Solyc07g019530.2.1	Tomato	cytosol	73.5	69.33
GSMUA_Achr4P20560_001	Banana	cytosol	72.4	68.65
HORVU7Hr1G060360.1	Barley	plastid	62.84	68.25
KXG24799	Sorghum	mitochondrion, plastid	71.31	67.1
TraesCS7A01G292000.1	Wheat	cytosol, nucleus, plastid	70.49	67.01
Zm00001d050216_P003	Maize	plastid	71.04	66.84
TraesCS7D01G288000.2	Wheat	cytosol, nucleus, plastid	71.58	66.84
Os08t0242900-01	Rice	nucleus	71.58	65.83
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	70.49	65.65
KRH38497	Soybean	cytosol	14.48	64.63
KRH13062	Soybean	cytosol	20.49	60.48
HORVU7Hr1G060410.1	Barley	cytosol	9.02	50.77
CDY61500	Canola	cytosol	15.3	38.36

Protein Annotations

EnsemblPlants:CDY52581	EnsemblPlantsGene:GSBRNA2T00007348001	InterPro:Afadin/alpha-actinin-bd	ncoils:Coil	PANTHER:PTHR21736	PANTHER:PTHR21736:SF12
PFAM:PF11559	ProteinID:CDY52581	ProteinID:CDY52581.1	SEG:seg	UniParc:UPI0004EF39FA	UniProt:A0A078IRW2
MapMan:35.2	:	:	:	:	:

Description

BnaCnng22660DBnaCnng22660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRW2]

Coordinates

chrLK033105:+:29528..32317

Molecular Weight (calculated)

42109.9 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.845

Length

366 amino acids

Sequence
(BLAST)

001: MSFTAPEFDH RFGFSTIGEE HSFADVDNLE HCVKYLNQSL VTYGFSASLD LFATDPVSIA RTCNCIYALI QQRQRDVEFR ESTNDQRQRL LSDMARLEAK
101: VERLENQLQS KERELGSVTR TEAKNTAALK AQNEKLQKER DEFQRMVIAN QQVKTQQLHE TKKKEKEYIK LQERLNQVLM EKKKETRSGM EIMNLLQKEG
201: RQRGTWTGKK TDSDFYKRIV DAYEAKNQEL MAENTDLRAL LRSTQGDMRS FLNANGRTSL DPSQSPLGGK TDVFDLPFRM ARGQIEDSLR SKMVSIKERM
301: GQLVDAQKEV TITSEASERE LELEAQLVEA RSIIQEQESI MSKHLPKTDR RRNSAPPSQS LSGLRG

Best Arabidopsis Sequence Match ( AT2G18876.1 )
(BLAST)

001: MSLTVPEFDF RLTPQFGFSQ SPIGERNFAD VDNLENCIKY LNQSLVTSGF SASLDLFATD PVSIARTCNC VYALIQQRQR DVEFRESAND QRQRLLSDMA
101: RLEAKVERLE TQLQAKEREL GSVTRTEAKN TAALKTQNEK LQKERDEFQR MVIANQQVKT QQLHETKKKE KEYIKLQERL NQVLMEKKKE TRSGMEIMNL
201: LQKEGRQRGT WSGKKTDSDF YKKIVDAYEA KNQELMAENT DLRALLRSTQ GDMRSFLNAS GGLTNQSLVA NGRHGADPSQ SPLGGKTDVF DLPFRMARGQ
301: IEDSLRSKMV SIKERMGQLV DAQKEVSITS EASERELELE AQLVEARSII QEQESIMSKH LPKTDRRRNS APPHSSVNGL RG

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:Q8GW47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.