Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41483 | Canola | cytosol | 98.07 | 98.07 |
| Bra016380.1-P | Field mustard | cytosol | 97.68 | 97.68 |
| CDY46646 | Canola | cytosol | 90.35 | 90.0 |
| CDY00447 | Canola | cytosol | 89.58 | 89.23 |
| CDY14618 | Canola | cytosol | 83.78 | 83.46 |
| CDX68022 | Canola | cytosol | 83.4 | 83.08 |
| CDX79255 | Canola | cytosol | 83.4 | 83.08 |
| AT1G78300.1 | Thale cress | cytosol | 82.63 | 82.63 |
| CDX88436 | Canola | cytosol | 82.63 | 82.31 |
| PGSC0003DMT400060654 | Potato | cytosol | 79.54 | 80.78 |
| Solyc04g012120.2.1 | Tomato | extracellular, nucleus | 79.15 | 80.39 |
| PGSC0003DMT400041810 | Potato | cytosol | 79.15 | 79.46 |
| CDY12024 | Canola | cytosol | 78.76 | 78.16 |
| CDY71290 | Canola | cytosol | 76.83 | 77.43 |
| CDX67405 | Canola | cytosol | 76.83 | 77.13 |
| CDY28408 | Canola | cytosol | 77.99 | 76.81 |
| CDX74521 | Canola | cytosol | 75.68 | 76.26 |
| CDY01659 | Canola | cytosol | 75.68 | 76.26 |
| CDY28698 | Canola | cytosol | 76.83 | 76.25 |
| CDY51543 | Canola | cytosol | 76.83 | 76.25 |
| CDX73313 | Canola | cytosol | 77.99 | 76.23 |
| CDX74252 | Canola | cytosol | 76.06 | 75.48 |
| CDX91996 | Canola | cytosol | 74.9 | 74.33 |
| Solyc11g010200.1.1 | Tomato | nucleus | 76.06 | 73.23 |
| CDY40098 | Canola | cytosol | 69.11 | 72.18 |
| CDX85759 | Canola | cytosol | 69.11 | 72.18 |
| CDX87455 | Canola | cytosol | 83.01 | 71.91 |
| CDY08794 | Canola | cytosol | 68.34 | 71.37 |
| CDY14562 | Canola | cytosol | 68.34 | 71.37 |
| CDY54716 | Canola | cytosol | 68.34 | 71.08 |
| CDX81287 | Canola | cytosol | 67.95 | 70.68 |
| CDX78381 | Canola | cytosol | 67.95 | 70.4 |
| CDX81179 | Canola | cytosol | 67.95 | 70.4 |
| CDX97016 | Canola | cytosol | 59.07 | 67.11 |
| CDY69181 | Canola | cytosol | 63.32 | 64.82 |
| CDY38227 | Canola | cytosol | 62.93 | 64.43 |
| CDY16161 | Canola | cytosol | 64.09 | 61.71 |
| CDX85023 | Canola | cytosol | 64.09 | 61.48 |
| CDY61201 | Canola | cytosol | 64.09 | 61.03 |
| CDY42826 | Canola | cytosol | 63.32 | 60.52 |
| CDY40251 | Canola | cytosol | 56.37 | 59.59 |
| Zm00001d013429_P001 | Maize | extracellular | 26.25 | 58.62 |
| CDY48771 | Canola | cytosol | 39.0 | 55.49 |
| CDY20560 | Canola | cytosol | 55.98 | 54.31 |
| KRH05108 | Soybean | cytosol | 32.43 | 52.83 |
| CDY61631 | Canola | cytosol | 64.09 | 50.61 |
| CDY24128 | Canola | cytosol | 63.71 | 50.3 |
| CDY56386 | Canola | mitochondrion | 37.07 | 48.73 |
| CDY52206 | Canola | mitochondrion | 37.07 | 48.73 |
| CDX91673 | Canola | cytosol | 50.19 | 48.33 |
| CDX87464 | Canola | cytosol | 38.61 | 47.17 |
| CDX88428 | Canola | cytosol | 42.47 | 45.64 |
| CDX97014 | Canola | cytosol, plastid | 19.3 | 45.45 |
| GSMUA_Achr3P17880_001 | Banana | cytosol | 29.73 | 43.75 |
| CDY03135 | Canola | cytosol | 57.92 | 38.07 |
| VIT_00s0199g00140.t01 | Wine grape | cytosol | 53.28 | 23.75 |
Protein Annotations
| Gene3D:1.20.190.20 | InterPro:14-3-3 | InterPro:14-3-3_CS | InterPro:14-3-3_dom_sf | InterPro:14-3-3_domain | MapMan:35.1 |
| GO:A0A078DQV9 | EnsemblPlants:CDX91676 | ProteinID:CDX91676 | ProteinID:CDX91676.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0019904 | EnsemblPlantsGene:GSBRNA2T00153143001 | InterPro:IPR036815 | PFAM:PF00244 |
| PIRSF:PIRSF000868 | PRINTS:PR00305 | ScanProsite:PS00796 | ScanProsite:PS00797 | PANTHER:PTHR18860 | PANTHER:PTHR18860:SF26 |
| SMART:SM00101 | SUPFAM:SSF48445 | UniParc:UPI00019D33D0 | : | : | : |
Description
BnaC08g05950D
Coordinates
chrLK031869:+:122744..123919
Molecular Weight (calculated)
29004.1 Da
IEP (calculated)
4.351
GRAVY (calculated)
-0.462
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSSREDYV YMAKLSEQAE RYEEMVEFME KLSAAADGAE LTVEERNLLS VAYKNVIGAR RASWRIISSI EQKEESRGND DRVKTIGDYK AKIESELAGI
101: CEGILKLLES ALVPSAASED SKVFYLKMKG DYYRYLAEFK IGKERDDAAD NTLSAYESAQ ENAKGLAPTH PIRLGLALNF SVFYYEILNS PDRACNLAKT
201: AFDAAIAELD TLGEESYKDS TLIMQLLRDN LTLWTSDMQD EAADEIKEAT PPKPAEEQK
101: CEGILKLLES ALVPSAASED SKVFYLKMKG DYYRYLAEFK IGKERDDAAD NTLSAYESAQ ENAKGLAPTH PIRLGLALNF SVFYYEILNS PDRACNLAKT
201: AFDAAIAELD TLGEESYKDS TLIMQLLRDN LTLWTSDMQD EAADEIKEAT PPKPAEEQK
001: MAAPPASSSA REEFVYLAKL AEQAERYEEM VEFMEKVAEA VDKDELTVEE RNLLSVAYKN VIGARRASWR IISSIEQKEE SRGNDDHVTT IRDYRSKIES
101: ELSKICDGIL KLLDTRLVPA SANGDSKVFY LKMKGDYHRY LAEFKTGQER KDAAEHTLTA YKAAQDIANA ELAPTHPIRL GLALNFSVFY YEILNSPDRA
201: CNLAKQAFDE AIAELDTLGE ESYKDSTLIM QLLRDNLTLW TSDMQDESPE EIKEAAAPKP AEEQKEI
101: ELSKICDGIL KLLDTRLVPA SANGDSKVFY LKMKGDYHRY LAEFKTGQER KDAAEHTLTA YKAAQDIANA ELAPTHPIRL GLALNFSVFY YEILNSPDRA
201: CNLAKQAFDE AIAELDTLGE ESYKDSTLIM QLLRDNLTLW TSDMQDESPE EIKEAAAPKP AEEQKEI
Arabidopsis Description
GF14 PHIGF14 protein phi chain [Source:UniProtKB/TrEMBL;Acc:F4HWQ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.