CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77004	Canola	nucleus	64.18	96.2
PGSC0003DMT400045538	Potato	nucleus	47.22	90.75
PGSC0003DMT400045541	Potato	nucleus	67.34	89.71
Solyc01g017360.1.1	Tomato	cytosol	10.13	86.02
CDY45508	Canola	cytosol	75.06	85.94
CDY17582	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	75.06	81.34
Solyc12g037940.1.1	Tomato	nucleus	13.16	76.47
ATCG00190.1	Thale cress	nucleus	91.39	67.35
Solyc12g035870.1.1	Tomato	extracellular	28.35	56.28
CDX77005	Canola	cytosol	5.7	12.53
CDY21192	Canola	nucleus, peroxisome, plastid	5.82	8.33

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.6.1.2.1.2	Gene3D:2.40.270.10	Gene3D:2.40.50.100	Gene3D:2.40.50.150
Gene3D:3.90.1100.10	Gene3D:3.90.1800.10	GO:A0A078HZP3	UniProt:A0A078HZP3	EnsemblPlants:CDY42814	ProteinID:CDY42814
ProteinID:CDY42814.1	InterPro:DNA-dir_RNAP_su2_dom	InterPro:DNA-dir_RNAP_su2_hyb_sf	InterPro:DNA-dir_RNA_pol_su2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0032549	EnsemblPlantsGene:GSBRNA2T00075494001	InterPro:IPR014724	InterPro:IPR037033	PFAM:PF00562	PFAM:PF04560
PFAM:PF04565	ScanProsite:PS01166	PANTHER:PTHR20856	PANTHER:PTHR20856:SF20	InterPro:RNA_pol_RPB2_OB-fold	InterPro:RNA_pol_Rpb2_3
InterPro:RNA_pol_Rpb2_7	InterPro:RNA_pol_bsu_CS	SUPFAM:SSF64484	UniParc:UPI0004EDE616	SEG:seg	:

Description

BnaC03g23920DDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078HZP3]

Coordinates

chrLK032535:+:135812..140108

Molecular Weight (calculated)

88566.0 Da

IEP (calculated)

9.608

GRAVY (calculated)

-0.365

Length

790 amino acids

Sequence
(BLAST)

001: MSSYHSLNGT HLRKENKVDS IQLQPLQRYN PGKILSQSSR AKERHKPQSS SVGADLLQDQ LGLALPRLEN VVKGTIGVEI RHKLIPTPQN LVTSTPLTTT
101: YESFFGLHPL SQVLDRTNPL TQIVHGRKLS YLGPGGLTGR TANFRIRDIH PSHYGRICPI DTSEGINVGL IGSLSIHARI GDWGSLESPF YELVEKSKKA
201: RIRMLFLSPS QDEYYMIAAG NSLALNRGIQ EEQAVPARYR QEFLTIAWEE VHLRSIFPFQ YFSIGASLIP FIEHNDANRA LMSSNMQRQA VPLSRSEKCI
301: VGTGLERQVA LDSGVPAIAE HEGKILYTDT EKIILSGNEN TLSIPLIMYQ RSNKNTCMHQ KPQVRRGKCI KKGQILADGA ATVGGELALG KNILVAYMPW
401: EGYNFEDAVL ISECLVYGDI YTSFHIRKYE IQTHVTTQGP ERITKEIPHL EGRLLRNLDK NGIVMLGSWV ETGDILVGKL TPQMAKESSY APEDRLLRAI
501: LGIQVSTSKE TCLKLPIGGR GRVIDVRWVQ KKGGSSYNPE IIRVYISQKR EIKVGDKVAG RHGNKGIISK ILPRQDMPYL QDGRPVDMVF NPLGVPSRMN
601: VGQIFECSLG LAGSLLDRHY RIAPFDERYE QEASRKLVFS ELYEASKQTA NPWVFEPEYP GKSRIFDGRT GDPFEQPVII GKPYILKLIH QVDDKIHGRS
701: SGHYALVTQQ PLRGRSKQGG QRVGEMEVWA LEGFGVAHIL QEMLTYKSDH IRARQEVLGT TIIGGTIPKP EDAPESFRLL KNFQINRKEV

Best Arabidopsis Sequence Match ( ATCG00190.1 )
(BLAST)

0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV

Arabidopsis Description

RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.