Factsheet for PGSC0003DMT400045541

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045538	Potato	nucleus	69.31	100.0
CDX77004	Canola	nucleus	82.12	92.41
Solyc12g037940.1.1	Tomato	nucleus	17.88	77.94
CDY42814	Canola	plastid	89.71	67.34
Solyc12g035870.1.1	Tomato	extracellular	40.64	60.55
CDY45508	Canola	cytosol	67.62	58.12
CDY17582	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	67.96	55.28
ATCG00190.1	Thale cress	nucleus	93.09	51.49

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.6.1.2.1.2	Gene3D:2.40.270.10	Gene3D:2.40.50.100	Gene3D:3.90.1100.10
Gene3D:3.90.1800.10	EntrezGene:4099994	wikigene:4099994	ProteinID:ABB90035	ProteinID:ABB90035.1	ProteinID:ABD47049
ProteinID:ABD47049.1	ProteinID:AEB72131	ProteinID:AEB72131.1	ProteinID:AEB72217	ProteinID:AEB72217.1	InterPro:DNA-dir_RNAP_su2_dom
InterPro:DNA-dir_RNAP_su2_hyb_sf	InterPro:DNA-dir_RNA_pol_su2	EMBL:DQ231562	EMBL:DQ386163	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0032549	InterPro:IPR037033	EMBL:JF772170	EMBL:JF772171	UniProt:M1BHU4	PFAM:PF00562
PFAM:PF04560	EnsemblPlantsGene:PGSC0003DMG402017663	PGSC:PGSC0003DMG402017663	EnsemblPlants:PGSC0003DMT400045541	ScanProsite:PS01166	PANTHER:PTHR20856
PANTHER:PTHR20856:SF20	InterPro:RNA_pol_Rpb2_7	InterPro:RNA_pol_bsu_CS	SUPFAM:SSF64484	UniParc:UPI000294BEB7	EntrezGene:rpoB
wikigene:rpoB	:	:	:	:	:

Description

DNA-directed RNA polymerase subunit beta [Source:PGSC_GENE;Acc:PGSC0003DMG402017663]

Coordinates

chr9:+:43789327..43796087

Molecular Weight (calculated)

66626.5 Da

IEP (calculated)

9.314

GRAVY (calculated)

-0.301

Length

593 amino acids

Sequence
(BLAST)

001: MVAAGNSLAL NRDIQEEQVV PARYRQEFLT IAWEQVHLRS IFPFQYFSIG ASLIPFIEHN DANRALMSSN MQRQAVPLSR SEKCIVGTGL ERQAALDSGA
101: LAIAEREGRI VYTNTDKILL AGNGDILSIP LVIYQRSNKN TCMHQKLRVP RGKCIKKGQI LADGAATVGG ELALGKNVLV AYMPWEGYNF EDAVLISERL
201: VYEDIYTSFH IRKYEIHTHV TSQGPEKVTN EIPHLEAHLL RNLDKKGIVM LGSWVETGDI LVGKLTPQVV KESSYAPEDR LLRAILGIQV STSKETCLKL
301: PIGGRGRVID VRWIQKRGGS SYNPETIRVY ISQKREIKVG DKVAGRHGNK GIISKILPRQ DMPYLQDGRS VDMVFNPLGV PSRMNVGQIF ECSLGLAGSL
401: LDRHYRIAPF DERYEQEASR KLVFSELYEA SKQTANPWVF EPEYPGKSRI FDGRTGNPFE QPVIIGKPYI LKLIHQVDDK IHGRSSGHYA LVTQQPLRGR
501: AKQGGQRVGE MEVWALEGFG VAHILQEMLT YKSDHIRARQ EVLGTTIIGG TIPNPEDAPE SFRLLVRELR SLALELNHFL VSEKNFQINR KEA

Best Arabidopsis Sequence Match ( ATCG00190.1 )
(BLAST)

0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV

Arabidopsis Description

RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.