Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17582 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 97.68 | 92.46 |
| CDY42814 | Canola | plastid | 85.94 | 75.06 |
| CDX77004 | Canola | nucleus | 53.77 | 70.4 |
| PGSC0003DMT400045541 | Potato | nucleus | 58.12 | 67.62 |
| ATCG00190.1 | Thale cress | nucleus | 91.88 | 59.14 |
| PGSC0003DMT400045538 | Potato | nucleus | 35.07 | 58.88 |
| Solyc01g017360.1.1 | Tomato | cytosol | 7.39 | 54.84 |
| Solyc12g037940.1.1 | Tomato | nucleus | 10.14 | 51.47 |
| Solyc12g035870.1.1 | Tomato | extracellular | 19.86 | 34.42 |
| CDX77005 | Canola | cytosol | 5.8 | 11.14 |
| CDY21192 | Canola | nucleus, peroxisome, plastid | 5.65 | 7.07 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:2.40.270.10 | Gene3D:2.40.50.100 | Gene3D:3.90.1100.10 | MapMan:35.1 |
| GO:A0A078I8N2 | UniProt:A0A078I8N2 | EnsemblPlants:CDY45508 | ProteinID:CDY45508 | ProteinID:CDY45508.1 | InterPro:DNA-dir_RNAP_su2_dom |
| InterPro:DNA-dir_RNAP_su2_hyb_sf | InterPro:DNA-dir_RNA_pol_su2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032549 | EnsemblPlantsGene:GSBRNA2T00082184001 | InterPro:IPR037033 |
| PFAM:PF00562 | PFAM:PF04561 | PFAM:PF04565 | PANTHER:PTHR20856 | PANTHER:PTHR20856:SF20 | InterPro:RNA_pol_Rpb2_2 |
| InterPro:RNA_pol_Rpb2_3 | SUPFAM:SSF64484 | UniParc:UPI0004EEB03E | SEG:seg | : | : |
Description
BnaCnng12670DBnaCnng12670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8N2]
Coordinates
chrLK032627:+:95816..99509
Molecular Weight (calculated)
76819.0 Da
IEP (calculated)
9.539
GRAVY (calculated)
-0.261
Length
690 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHSPLKNNI FLLPRDILAA ADHLIGMKFG MGTLDDMNHL KNKRIRSVAD LLQDQLGLAL ARLENVVKGT IGGAIRHKLI PTPQNLVTST PLTTTYESFF
101: GLHPLSQVLD RTNPLTQIVH GRKLSYLGPG GLTGRTANFR IRDIHPSHYG RICPIDTSEG INVGLIGSLS IHARIGDWGS LESPFYELVE KSKKARIRML
201: FLSPSQDEYY MIAAGNSLAL NRGIQEEQAV PARYRQEFLT IAWEEVHLRS IFPFQYFSIG ASLIPFIEHN DANRALMSSN MQRQAVPLSR SEKCIVGTGL
301: ERQVALDSGV PAIAEHEGKI LYTDTEKIIL SGNENTLSIP LIMYQRSNKN TCMHQKPQVR RGKCIKKGQI LADGAATVGG ELALGKNILV AYMPWEGYNF
401: EDAVLISECL VYGDIYTSFH IRKYEIQTHV TTQGPERITK EIPHLEGRLL RNLDKNGIVM LGSWVETGDI LVGKLTPQMA KESSYAPEDR LLRAILGIQD
501: MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ
601: PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRR SKHASQRIPT SGVNAISHPF LSQGRPVRGL PAIGNGISRR GVGGTRLRAG
101: GLHPLSQVLD RTNPLTQIVH GRKLSYLGPG GLTGRTANFR IRDIHPSHYG RICPIDTSEG INVGLIGSLS IHARIGDWGS LESPFYELVE KSKKARIRML
201: FLSPSQDEYY MIAAGNSLAL NRGIQEEQAV PARYRQEFLT IAWEEVHLRS IFPFQYFSIG ASLIPFIEHN DANRALMSSN MQRQAVPLSR SEKCIVGTGL
301: ERQVALDSGV PAIAEHEGKI LYTDTEKIIL SGNENTLSIP LIMYQRSNKN TCMHQKPQVR RGKCIKKGQI LADGAATVGG ELALGKNILV AYMPWEGYNF
401: EDAVLISECL VYGDIYTSFH IRKYEIQTHV TTQGPERITK EIPHLEGRLL RNLDKNGIVM LGSWVETGDI LVGKLTPQMA KESSYAPEDR LLRAILGIQD
501: MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ
601: PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRR SKHASQRIPT SGVNAISHPF LSQGRPVRGL PAIGNGISRR GVGGTRLRAG
0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
Arabidopsis Description
RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.