Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77004 | Canola | nucleus | 48.51 | 98.67 |
| PGSC0003DMT400045538 | Potato | nucleus | 36.57 | 95.38 |
| PGSC0003DMT400045541 | Potato | nucleus | 51.49 | 93.09 |
| CDY45508 | Canola | cytosol | 59.14 | 91.88 |
| CDY42814 | Canola | plastid | 67.35 | 91.39 |
| CDY17582 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 59.33 | 87.24 |
| Solyc01g017360.1.1 | Tomato | cytosol | 7.46 | 86.02 |
| Solyc12g037940.1.1 | Tomato | nucleus | 9.7 | 76.47 |
| Solyc12g035870.1.1 | Tomato | extracellular | 22.11 | 59.55 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.6.1.2.1.2 | Gene3D:2.30.150.10 | Gene3D:2.40.270.10 | Gene3D:2.40.50.100 |
| Gene3D:2.40.50.150 | Gene3D:3.90.1100.10 | Gene3D:3.90.1110.10 | Gene3D:3.90.1800.10 | EntrezGene:844783 | UniProt:A0A1B1W4T9 |
| ProteinID:ANW47782.1 | ArrayExpress:ATCG00190 | EnsemblPlantsGene:ATCG00190 | RefSeq:ATCG00190 | TAIR:ATCG00190 | RefSeq:ATCG00190-TAIR-G |
| EnsemblPlants:ATCG00190.1 | TAIR:ATCG00190.1 | ProteinID:BAA84377.1 | ProteinID:CAA58965.1 | ProteinID:CAA74024.1 | InterPro:DNA-dir_RNAP_su2_dom |
| InterPro:DNA-dir_RNAP_su2_hyb_sf | InterPro:DNA-dir_RNA_pol_su2 | GO:GO:0000428 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006354 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009295 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | GO:GO:0032549 | InterPro:IPR014724 | InterPro:IPR037033 | InterPro:IPR037034 |
| HAMAP:MF_01321 | RefSeq:NP_051051.1 | UniProt:P50546 | PFAM:PF00562 | PFAM:PF04560 | PFAM:PF04561 |
| PFAM:PF04563 | PFAM:PF04565 | ScanProsite:PS01166 | PANTHER:PTHR20856 | PANTHER:PTHR20856:SF20 | InterPro:RNA_pol_RPB2_OB-fold |
| InterPro:RNA_pol_Rpb2_2 | InterPro:RNA_pol_Rpb2_2_sf | InterPro:RNA_pol_Rpb2_3 | InterPro:RNA_pol_Rpb2_7 | InterPro:RNA_pol_bsu_CS | InterPro:RNA_pol_bsu_bac |
| InterPro:RNA_pol_bsu_protrusion | Symbol:RPOB | SUPFAM:SSF64484 | UniParc:UPI00001638A7 | SEG:seg | : |
Description
RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
Coordinates
chrPt:-:23111..26329
Molecular Weight (calculated)
121066.0 Da
IEP (calculated)
8.697
GRAVY (calculated)
-0.260
Length
1072 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.