CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045538	Potato	nucleus	74.19	95.13
Solyc01g017360.1.1	Tomato	cytosol	15.18	86.02
PGSC0003DMT400045541	Potato	nucleus	92.41	82.12
Solyc12g037940.1.1	Tomato	nucleus	19.73	76.47
CDY42814	Canola	plastid	96.2	64.18
Solyc12g035870.1.1	Tomato	extracellular	44.97	59.55
CDY45508	Canola	cytosol	70.4	53.77
CDY17582	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	70.78	51.17
ATCG00190.1	Thale cress	nucleus	98.67	48.51
CDX77005	Canola	cytosol	7.4	10.86
CDY21192	Canola	nucleus, peroxisome, plastid	7.4	7.07

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.40.270.10	Gene3D:2.40.50.100	Gene3D:2.40.50.150	Gene3D:3.90.1100.10
Gene3D:3.90.1800.10	MapMan:35.1	GO:A0A078CLW1	EnsemblPlants:CDX77004	ProteinID:CDX77004	ProteinID:CDX77004.1
InterPro:DNA-dir_RNAP_su2_dom	InterPro:DNA-dir_RNAP_su2_hyb_sf	InterPro:DNA-dir_RNA_pol_su2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0032549	EnsemblPlantsGene:GSBRNA2T00127562001
InterPro:IPR014724	InterPro:IPR037033	PFAM:PF00562	PFAM:PF04560	ScanProsite:PS01166	PANTHER:PTHR20856
PANTHER:PTHR20856:SF20	InterPro:RNA_pol_RPB2_OB-fold	InterPro:RNA_pol_Rpb2_7	InterPro:RNA_pol_bsu_CS	SUPFAM:SSF64484	UniParc:UPI0004EF2816

Description

BnaC04g37990D

Coordinates

chrLK031809:+:327665..329248

Molecular Weight (calculated)

59202.8 Da

IEP (calculated)

9.350

GRAVY (calculated)

-0.365

Length

527 amino acids

Sequence
(BLAST)

001: MSSNMQRQAV PLSRSEKCIV GTGLERQVAL DSGVTTIAEH EGKILYTDTE KIILSGNENT LSIPLIMYQR SNKNTCMHQK PQVRRGKCIK KGQILADGAA
101: TVGGELALGK NILVAYMPWE GYNFEDAVLI SECLVYGDIY TSFHIRKYEI QTHVTTQGPE RITKEIPHLE GRLLRNLDKN GIVMLGSWVE TGDILVGKLT
201: PQMAKESSYA PEDRLLRAIL GIQVSTSKET CLKLPIGGRG RVIDVRWVQK KGGSSYNPEI IRVYISQKRE IKVGDKVAGR HGNKGIISKI LPRQDMPYLQ
301: DGRPVDMVFN PLGVPSRMNV GQIFECSLGL AGSLLDRHYR IAPFDERYEQ EASRKLVFSE LYEASKQTAN PWVFEPEYPG KSRIFDGRTG DPFEQPVIIG
401: KPYILKLIHQ VDDKIHGRSS GHYALVTQQP LRGRSKQGGQ RVGEMEVWAL EGFGVAHILQ EMLTYKSDHI RARQEVLGTT IIGGTIPKPE DAPESFRLLV
501: RELRSLALEL NHFLVSEKNF QINRKEV

Best Arabidopsis Sequence Match ( ATCG00190.1 )
(BLAST)

0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV

Arabidopsis Description

RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.