Factsheet for Solyc12g035870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g017360.1.1	Tomato	cytosol	13.82	59.14
Solyc12g037940.1.1	Tomato	nucleus	18.09	52.94
CDX77004	Canola	nucleus	59.55	44.97
PGSC0003DMT400045541	Potato	nucleus	60.55	40.64
Solyc12g017750.1.1	Tomato	nucleus	9.3	28.46
CDY42814	Canola	plastid	56.28	28.35
ATCG00190.1	Thale cress	nucleus	59.55	22.11
Solyc03g065320.1.1	Tomato	nucleus	4.77	20.65
CDY45508	Canola	cytosol	34.42	19.86
CDY17582	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	34.92	19.07
Solyc01g095950.1.1	Tomato	extracellular	0.0	0.0
Solyc12g035930.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.40.270.10	Gene3D:2.40.50.150	MapMan:35.1	InterPro:DNA-dir_RNAP_su2_dom
InterPro:DNA-dir_RNAP_su2_hyb_sf	InterPro:DNA-dir_RNA_pol_su2	GO:GO:0000428	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0032549
InterPro:IPR014724	InterPro:IPR037033	UniProt:K4DE44	PFAM:PF00562	PFAM:PF04560	PANTHER:PTHR20856
PANTHER:PTHR20856:SF20	InterPro:RNA_pol_RPB2_OB-fold	InterPro:RNA_pol_Rpb2_7	SUPFAM:SSF64484	EnsemblPlantsGene:Solyc12g035870.1	EnsemblPlants:Solyc12g035870.1.1
UniParc:UPI0002769E9B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:54304176..54305879

Molecular Weight (calculated)

46656.4 Da

IEP (calculated)

8.447

GRAVY (calculated)

-0.442

Length

398 amino acids

Sequence
(BLAST)

001: MVGEFALGKN VLVAYMTLEG YNSEDALLIS ERLVYKDTYT SFHIRKYDIH THVTSQEDRL LRAILCIQES TSKETCLKLP KGCRGRVIDV RWIQKKGYNP
101: KMICVYISQK HEIKVGDKIA GRHRKRQTFE CSLGLARSLL ERHYQMAPFD ERYEQEASRK LLFFELYEAS KQIMNPWVIE PEYSGKSRIF DGRTWNPFEQ
201: PVIIGNPYIL KLIHQVDYKI HGHSSGHDME VWALEGFGVV HILKEMITYK SDHNREIQEI LGTTIIGGTI PNREDAPESF RLLVRELRSF GLELNHFLRK
301: KILYFHYKTN KPEEDGLFCE RNFVPINSGI CSCGNYRVTG EEKENPKFCE QCGLEFVNSR IQRYQMDYIK LGCSVTHVWY LKRLPSYIVN LFDKPLKE

Best Arabidopsis Sequence Match ( ATCG00190.1 )
(BLAST)

0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV

Arabidopsis Description

RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.